RetrogeneDB ID: | retro_dnov_157 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_2194:816737..817284(+) | ||
Located in intron of: | ENSDNOG00000012558 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL10A | ||
Ensembl ID: | ENSDNOG00000012921 | ||
Aliases: | None | ||
Description: | ribosomal protein L10a [Source:HGNC Symbol;Acc:10299] |
Percent Identity: | 83.87 % |
Parental protein coverage: | 83.56 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | QISLKNYDPQKDKRFSGTVRLKST-PRPKFSVCVLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKL |
QI.LKNYDPQKDKRFSGTVRL.ST.P.P..S.CVLGDQQHCDEAKAVDIPH.DI.ALKKLNKNKKLVKKL | |
Retrocopy | QIILKNYDPQKDKRFSGTVRLQST>PAPS-SPCVLGDQQHCDEAKAVDIPHVDIKALKKLNKNKKLVKKL |
Parental | AKKYDAFLASESLIKQIPRILGPGLNKAGKFP-SLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHV |
AKKYDAFL.SESLIK.IPRILGPGL.KAGKF..SLLTH.ENM.AKV.EVK.T..F.MKKVLC.AVAVGHV | |
Retrocopy | AKKYDAFLVSESLIK*IPRILGPGLSKAGKFS>SLLTHSENMWAKVGEVKLTVEF*MKKVLCPAVAVGHV |
Parental | KMTDDELVY-NIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY |
KMTDDELV...IHLAVNFL.SLL.KNWQNVRALY.KST.GKPQ.LY | |
Retrocopy | KMTDDELVH<HIHLAVNFLMSLLNKNWQNVRALYTKSTVGKPQPLY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 508 .34 RPM |
SRP012922_cerebellum | 0 .00 RPM | 227 .65 RPM |
SRP012922_heart | 0 .70 RPM | 248 .97 RPM |
SRP012922_kidney | 1 .37 RPM | 758 .14 RPM |
SRP012922_liver | 3 .41 RPM | 261 .47 RPM |
SRP012922_lung | 0 .15 RPM | 582 .03 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 318 .65 RPM |
SRP012922_spleen | 0 .46 RPM | 713 .32 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000019494 | 4 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000012921 | 3 retrocopies |
retro_dnov_157 , retro_dnov_1917, retro_dnov_469,
|
Macropus eugenii | ENSMEUG00000005760 | 6 retrocopies | |
Monodelphis domestica | ENSMODG00000013766 | 2 retrocopies | |
Mus musculus | ENSMUSG00000037805 | 8 retrocopies | |
Ornithorhynchus anatinus | ENSOANG00000014574 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000002047 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000001543 | 7 retrocopies |