RetrogeneDB ID: | retro_btau_1501 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 6:84904096..84904703(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL10A | ||
Ensembl ID: | ENSBTAG00000019494 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L10a [Source:UniProtKB/Swiss-Prot;Acc:Q5E9E6] |
Percent Identity: | 66.83 % |
Parental protein coverage: | 94.47 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MSSKVSRDTLYEAVREVLHGNQRKRRKFLETVELQISLKNYD-PQKDKRFS-GTVRLKSTPRPKFSVCVL |
MSS.V..DTLYE.V.EVLHGNQ.K....LE.V.LQISLKN.D.PQKDK.FS..TVRLK..P..KFS..VL | |
Retrocopy | MSSEVFCDTLYETVQEVLHGNQHKCQNVLEMVDLQISLKNCD<PQKDKHFS<STVRLKFIPLTKFSIYVL |
Parental | GDQQHCDEAKA-VDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSL |
GDQQHCDE.......P..........N..K..VKKLA.KYD.FLA.ESL.KQ.P.ILGP.LN..GK.PSL | |
Retrocopy | GDQQHCDEVRLWINLPY-EHQGTEENNNRKR-VKKLANKYD-FLAPESLFKQVP*ILGPRLNNIGKLPSL |
Parental | LTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALY |
LTHNENM.AKVD.VKS.IKFQ.KK.LCL.VAVGHVKM.DDELVYNIHLAV..LVSL.KKN.QNV.... | |
Retrocopy | LTHNENMMAKVDDVKSMIKFQIKKMLCLSVAVGHVKMMDDELVYNIHLAVKLLVSLHKKN*QNVQSVH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .29 RPM | 71 .95 RPM |
ERP005899_muscle | 0 .32 RPM | 878 .62 RPM |
SRP017611_brain | 0 .18 RPM | 58 .88 RPM |
SRP017611_kidney | 0 .30 RPM | 153 .22 RPM |
SRP017611_liver | 0 .38 RPM | 130 .48 RPM |
SRP030211_testis | 0 .25 RPM | 62 .67 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000019494 | 4 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000012921 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000005760 | 6 retrocopies | |
Monodelphis domestica | ENSMODG00000013766 | 2 retrocopies | |
Mus musculus | ENSMUSG00000037805 | 8 retrocopies | |
Ornithorhynchus anatinus | ENSOANG00000014574 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000002047 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000001543 | 7 retrocopies |