RetrogeneDB ID: | retro_dnov_1917 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_36510:9080..9733(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL10A | ||
Ensembl ID: | ENSDNOG00000012921 | ||
Aliases: | None | ||
Description: | ribosomal protein L10a [Source:HGNC Symbol;Acc:10299] |
Percent Identity: | 67.12 % |
Parental protein coverage: | 99.54 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | TMSSKVSRDTLYEAVREVLHGNQRK-RRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSVCVL |
TMSSKV..DTLY..V.EV.H..Q.K...KFLE.V.LQI.LKNYDP......S..........P....C.. | |
Retrocopy | TMSSKVPHDTLYKVV*EVWHRHQCK>AEKFLEMVDLQINLKNYDPHSEGQMSLRHHQA*VYSPSQVLCMC |
Parental | -GDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRIL-GPGLNKAGKFPS |
.GD.QHCD.AK.VD..HMDIE.LKK..KNK.LVKKLAKK.D.FLASES..KQIP.IL.GP.LNKAGKF.S | |
Retrocopy | SGDKQHCDKAKTVDSLHMDIETLKK-HKNKRLVKKLAKK*DVFLASESQTKQIPQIL<GPSLNKAGKFSS |
Parental | LLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVR-ALY |
LLT.NEN...KV..VKSTIKFQ.KK.LCLAVAVGHVKMTD.ELVYN..L..NFLVSLLKKNWQN.R.AL. | |
Retrocopy | LLTYNENIMIKVNAVKSTIKFQIKKLLCLAVAVGHVKMTDNELVYNFQLGINFLVSLLKKNWQNAR<AL* |
Parental | IKSTMGKPQRLY |
IKSTMGK.Q.LY | |
Retrocopy | IKSTMGKSQDLY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 508 .34 RPM |
SRP012922_cerebellum | 0 .00 RPM | 227 .65 RPM |
SRP012922_heart | 0 .00 RPM | 248 .97 RPM |
SRP012922_kidney | 0 .00 RPM | 758 .14 RPM |
SRP012922_liver | 0 .00 RPM | 261 .47 RPM |
SRP012922_lung | 0 .00 RPM | 582 .03 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 318 .65 RPM |
SRP012922_spleen | 0 .00 RPM | 713 .32 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000019494 | 4 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000012921 | 3 retrocopies |
retro_dnov_157, retro_dnov_1917 , retro_dnov_469,
|
Macropus eugenii | ENSMEUG00000005760 | 6 retrocopies | |
Monodelphis domestica | ENSMODG00000013766 | 2 retrocopies | |
Mus musculus | ENSMUSG00000037805 | 8 retrocopies | |
Ornithorhynchus anatinus | ENSOANG00000014574 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000002047 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000001543 | 7 retrocopies |