RetrogeneDB ID: | retro_btau_1392 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 5:82512809..82513128(+) | ||
Located in intron of: | ENSBTAG00000006369 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | POMP | ||
Ensembl ID: | ENSBTAG00000014024 | ||
Aliases: | None | ||
Description: | Proteasome maturation protein [Source:UniProtKB/Swiss-Prot;Acc:Q3SZV5] |
Percent Identity: | 91.59 % |
Parental protein coverage: | 75.18 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | SCVKNELLPSHPLELSEKNFQLNQDKMNFS-TLRNIQGLFAPLKLQMEFKAVQQVQRLPFLPSSNLSLDI |
SCVKNELLPSHPLELSEKN.QLNQDK.NFS.TLRNIQGL.A.LKLQMEFKA.QQV.RLPFLPSSNLSLDI | |
Retrocopy | SCVKNELLPSHPLELSEKNYQLNQDKVNFS>TLRNIQGLSASLKLQMEFKAGQQVKRLPFLPSSNLSLDI |
Parental | LRGNDETIGFEDILNDPSQSELMGEPHLMVEYKLGLL |
LRGNDETIGFEDILNDPS.SEL.GEPHLMVEYKLGLL | |
Retrocopy | LRGNDETIGFEDILNDPSKSELIGEPHLMVEYKLGLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 121 .19 RPM |
ERP005899_muscle | 0 .05 RPM | 70 .63 RPM |
SRP017611_brain | 0 .00 RPM | 46 .04 RPM |
SRP017611_kidney | 0 .06 RPM | 96 .67 RPM |
SRP017611_liver | 0 .08 RPM | 41 .61 RPM |
SRP030211_testis | 0 .04 RPM | 79 .28 RPM |