RetrogeneDB ID: | retro_rnor_625 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 1:185299663..185300015(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000049730 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Pomp | ||
Ensembl ID: | ENSRNOG00000049229 | ||
Aliases: | None | ||
Description: | proteasome maturation protein [Source:RefSeq peptide;Acc:NP_001094412] |
Percent Identity: | 84.75 % |
Parental protein coverage: | 82.98 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MNARGLGSQLKDSIPVTELSASGPFESHDLLRKGFSCVKNELLPSHPLELSEKN-FQLNQDKMNFSTLRN |
M.ARGLG.QLKDSI.VTELSA.G.FES..LL.KGFSCVKNELLPSHPLELS....FQLNQDKMNFSTLRN | |
Retrocopy | MKARGLGWQLKDSITVTELSANGSFESLALLQKGFSCVKNELLPSHPLELSXXX>FQLNQDKMNFSTLRN |
Parental | IQGLFAPLKLQMEFKAVQQVQRLPFLPSSNLSLDILRGNDETIGFEDI |
IQG.FAPLKLQMEFKAV.Q.QRL.FL.SSNLSLDILRGNDETI.FEDI | |
Retrocopy | IQGVFAPLKLQMEFKAVRQLQRLLFLLSSNLSLDILRGNDETIDFEDI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .07 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .07 RPM |
SRP017611_liver | 0 .00 RPM | 0 .07 RPM |