RetrogeneDB ID: | retro_mmul_2603 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | X:82294885..82295237(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | POMP | ||
Ensembl ID: | ENSMMUG00000000097 | ||
Aliases: | None | ||
Description: | proteasome maturation protein [Source:RefSeq peptide;Acc:NP_001244735] |
Percent Identity: | 71.19 % |
Parental protein coverage: | 73.58 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | NARGLGSELKDSIPVTELSASGPFESHDLLRKGFSCVKNELLPSHPLELSEKNFQLNQDKMNFSTLRNIQ |
..RGLGS.LK.SIP.TEL.A.G...SH.LL.....C.KNELLPSHPLE.SE.NFQLNQDKMN.S.LRNIQ | |
Retrocopy | DTRGLGSHLKGSIPATELAARGSLASHNLLTILCVCMKNELLPSHPLEFSEENFQLNQDKMNISPLRNIQ |
Parental | GLFAPLKLQME-FKAVQQVQRLPFLSSSNLSLDILRGNDETIGFEDIL |
.LFAPLKL..E.FKAVQQ...LPFL.SSNLSLDILRGN.ET..FE..L | |
Retrocopy | WLFAPLKL*IE>FKAVQQI*CLPFLLSSNLSLDILRGNEETTRFEAML |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 36 .98 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 18 .48 RPM |
SRP007412_cerebellum | 0 .00 RPM | 30 .87 RPM |
SRP007412_heart | 0 .00 RPM | 24 .14 RPM |
SRP007412_kidney | 0 .00 RPM | 37 .91 RPM |
SRP007412_liver | 0 .00 RPM | 17 .61 RPM |
SRP007412_testis | 0 .00 RPM | 40 .26 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4866 |
Gorilla gorilla | retro_ggor_3038 |
Pongo abelii | retro_pabe_3783 |
Callithrix jacchus | retro_cjac_4191 |