RetrogeneDB ID: | retro_btau_755 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 19:25742084..25742405(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | POMP | ||
Ensembl ID: | ENSBTAG00000014024 | ||
Aliases: | None | ||
Description: | Proteasome maturation protein [Source:UniProtKB/Swiss-Prot;Acc:Q3SZV5] |
Percent Identity: | 77.98 % |
Parental protein coverage: | 75.89 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | FSCVKNELLPSHPLEL-SEKNFQLNQDKMNFSTLRNIQGLFAPLKLQMEFKAVQQVQRLPFLPSSNLSLD |
F.CVKNELLPSH.LEL..E.NFQ.NQDKMNFST.RNI.GLFAPLKL.MEFKA.QQV..LPFLPSS.LS.D | |
Retrocopy | FPCVKNELLPSHSLEL>QEQNFQFNQDKMNFSTPRNIWGLFAPLKLHMEFKAMQQVLHLPFLPSSKLSVD |
Parental | I-LRGNDETIGFEDILNDPSQSELMGEPHLMVEYKLGLL |
I.LR.NDE.IGFEDI.ND.SQ.ELMGE.HLM.EYKL..L | |
Retrocopy | I<LRNNDEAIGFEDIFNDMSQRELMGELHLMMEYKLDFL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 121 .19 RPM |
ERP005899_muscle | 0 .00 RPM | 70 .63 RPM |
SRP017611_brain | 0 .05 RPM | 46 .04 RPM |
SRP017611_kidney | 0 .00 RPM | 96 .67 RPM |
SRP017611_liver | 0 .00 RPM | 41 .61 RPM |
SRP030211_testis | 0 .00 RPM | 79 .28 RPM |