RetrogeneDB ID: | retro_ocun_1377 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 7:124407224..124407573(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | POMP | ||
Ensembl ID: | ENSOCUG00000010137 | ||
Aliases: | None | ||
Description: | proteasome maturation protein [Source:HGNC Symbol;Acc:20330] |
Percent Identity: | 75.83 % |
Parental protein coverage: | 84.29 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | PFESHDLL-RKGFSCVKNEL-LPSHPLELSEKNFQLNQDKMNFSTLRNIQGLFAPLKLQMEFKAVQQVQR |
PF.S......KGF.CV.NEL.LPS.PLELS..NFQLN.DKMNF.TLRNIQG.FAPLKLQMEFKAVQ.VQ. | |
Retrocopy | PFVSQNVF<HKGFPCVTNEL<LPSPPLELSGRNFQLNKDKMNFPTLRNIQGPFAPLKLQMEFKAVQHVQS |
Parental | LPFLTSSNLSLDILRGNDETIGFEDILNDPSQSELMGEPHLMVEHKLGLL |
L.FLTSSNLS...LRGNDETIGFE..L..PSQSELMGE.HL.VEHKL.LL | |
Retrocopy | LLFLTSSNLS-GYLRGNDETIGFEVTLDNPSQSELMGETHLTVEHKLILL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 48 .79 RPM |
SRP017611_kidney | 0 .00 RPM | 61 .52 RPM |
SRP017611_liver | 0 .00 RPM | 30 .37 RPM |