RetrogeneDB ID: | retro_dnov_1919 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_36662:4096..4457(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | POMP | ||
Ensembl ID: | ENSDNOG00000008848 | ||
Aliases: | None | ||
Description: | proteasome maturation protein [Source:HGNC Symbol;Acc:20330] |
Percent Identity: | 54.1 % |
Parental protein coverage: | 90.98 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | NTRGLGSQLKDSIPVTELSASGPFESQDLLRKGXXXXXXXXXXXXXXXLSEKNFQLNQDKMNFSTLRNIQ |
N.RGL...LKD.....EL.ASGP.ESQ.LL.K.................S..NFQ...DK..FSTLRNIQ | |
Retrocopy | NARGLDLLLKDTSSASELAASGPSESQCLLGKSFPCVRNERLPSHALE*SRENFQFHRDKRLFSTLRNIQ |
Parental | GLFAPLKLQ-MEFKAVQQAQRLPFLPSSNLSLDILRGNDETIGFEDILNGEP |
GL..PLKL..MEFKAV.QAQ..PFL..S.LSLD...GN.E..G.EDILN..P | |
Retrocopy | GLPGPLKLH>MEFKAVPQAQQFPFLLGSDLSLD-F*GNEEAAGLEDILNEPP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .19 RPM | 53 .09 RPM |
SRP012922_cerebellum | 0 .27 RPM | 44 .13 RPM |
SRP012922_heart | 0 .00 RPM | 56 .85 RPM |
SRP012922_kidney | 0 .00 RPM | 56 .13 RPM |
SRP012922_liver | 0 .15 RPM | 41 .18 RPM |
SRP012922_lung | 0 .00 RPM | 44 .90 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 70 .10 RPM |
SRP012922_spleen | 0 .57 RPM | 51 .74 RPM |