RetrogeneDB ID: | retro_btau_837 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 2:119050743..119051406(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000005584 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SFRS9 | ||
Ensembl ID: | ENSBTAG00000012792 | ||
Aliases: | SRSF9, SFRS9 | ||
Description: | serine/arginine-rich splicing factor 9 [Source:RefSeq peptide;Acc:NP_001076867] |
Percent Identity: | 97.74 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSGWADERGGEGDGRIYVGNLPSDVREKDLEDLFYKYGRISEIELKNRHGLVPFAFVRFEDPRDAEDAIY |
MSGW.DERGGEGDGRIYVGNLP.DVREKDLEDLFYKYG.ISEIELKNRHGLVPFAFVRFEDPRDAEDA.Y | |
Retrocopy | MSGWEDERGGEGDGRIYVGNLPNDVREKDLEDLFYKYGHISEIELKNRHGLVPFAFVRFEDPRDAEDAVY |
Parental | GRNGYDYGQCRLRVEFPRTYGGRGGWPRGGRSGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYA |
GRNGYDYGQCRLRVEFPRTYGGRGGWPRGGRSGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYA | |
Retrocopy | GRNGYDYGQCRLRVEFPRTYGGRGGWPRGGRSGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYA |
Parental | DVQKDGMGMVEYLRKEDMEYALRKLDETKFRSHEGETSYIRVYPERSTSYGYSRSRSGSRGRDSPYQSRG |
DVQKDGMGMVEYLRKEDMEYALRKLDETKFRSHEGETSYIRVYPERSTSYGYSRSRSGSRGRDSPYQSRG | |
Retrocopy | DVQKDGMGMVEYLRKEDMEYALRKLDETKFRSHEGETSYIRVYPERSTSYGYSRSRSGSRGRDSPYQSRG |
Parental | SPHYFSPFRPY |
SPH.FSPFRPY | |
Retrocopy | SPHDFSPFRPY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .22 RPM | 14 .20 RPM |
ERP005899_muscle | 0 .16 RPM | 26 .50 RPM |
SRP017611_brain | 0 .18 RPM | 12 .97 RPM |
SRP017611_kidney | 0 .18 RPM | 21 .81 RPM |
SRP017611_liver | 0 .15 RPM | 11 .78 RPM |
SRP030211_testis | 1 .03 RPM | 21 .11 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000012792 | 1 retrocopy |
retro_btau_837 ,
|
Bos taurus | ENSBTAG00000040006 | 5 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000009241 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000001187 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000012598 | 2 retrocopies | |
Homo sapiens | ENSG00000111786 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016494 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015661 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003852 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000004234 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005031 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000005685 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000009906 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000008499 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000006848 | 4 retrocopies |