RetrogeneDB ID: | retro_chof_1119 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_204612:1476..1869(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SRSF9 | ||
Ensembl ID: | ENSCHOG00000009241 | ||
Aliases: | None | ||
Description: | serine/arginine-rich splicing factor 9 [Source:HGNC Symbol;Acc:10791] |
Percent Identity: | 90.84 % |
Parental protein coverage: | 82.91 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | GGRGGWPRAGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGMGMVEYLRKEDMEY |
GGRGGWP..GRNGPPTRRSDFRVL.SG.PPSGSWQDLKDH.REAGDVCYADVQKD.MGMVE.LRKEDMEY | |
Retrocopy | GGRGGWPPGGRNGPPTRRSDFRVLASGPPPSGSWQDLKDHVREAGDVCYADVQKDAMGMVECLRKEDMEY |
Parental | ALRKLDDTKFRSHEGETSYIRVYPERSTSYGYSRSRSGSRGRDSPYQSRGSPHYFSPFRPY |
ALRKLDDTKFRSHEGETSYIRVYPERSTSYG.SRSRSGSRG.DSPYQSRGSPH.F.PFRP. | |
Retrocopy | ALRKLDDTKFRSHEGETSYIRVYPERSTSYGCSRSRSGSRGGDSPYQSRGSPH*FFPFRPH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000012792 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000009241 | 1 retrocopy |
retro_chof_1119 ,
|
Choloepus hoffmanni | ENSCHOG00000013858 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000001187 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000012598 | 2 retrocopies | |
Homo sapiens | ENSG00000111786 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016494 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015661 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003852 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000004234 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005031 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000005685 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000009906 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000008499 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000006848 | 4 retrocopies |