RetrogeneDB ID:

retro_tsyr_585

Retrocopy
location
Organism:Tarsier (Tarsius syrichta)
Coordinates:scaffold_143734:1139..1612(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:SRSF9
Ensembl ID:ENSTSYG00000006848
Aliases:None
Description:serine/arginine-rich splicing factor 9 [Source:HGNC Symbol;Acc:10791]


Retrocopy-Parental alignment summary:






>retro_tsyr_585
GATGCTGAGGGTGCAATTTATGGAAGGAATGGTTATGATTATGGCCAGTGTCGGCTTCGTGTGGAGTTCCCCAGGACTTG
TGGAAGTCGGGGTGGTGGCCCCGAGGTGGGAGGAATGGGCCTCCTACAAGAAGATCTGATTTCCGAGTTCTTGTTTCAGG
ACTTCCTCCATCAGGCAGCTGGCAGGACCTGAAGGATCACATGCAAGAAGCTGGGGATGTCTGTTATGCAGATGTACAAA
AGGATGGAATGGGGATGGTTGTGTATCCCAGAAAAGAAGACATGGAATATGCCCTGTATAAACTGGGTGACAACAAATTC
CACTCCCATGAGGGTGAAACTTCCTACATCCGAGTTTATCTTGAGAGAAGAACCAGCTATGGCTACTCACGGTCCCGATC
TGGGTCAAGGGGCCATGATTCTCCATACCAAGGCAGGGGTTCCCCACACTACTTCTCTCCTTTCAGGCACTTA

ORF - retro_tsyr_585 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 88.05 %
Parental protein coverage: 72.43 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalDAEDAIYGRNGYDYGQCRLRVEFPRTYGSRGG-WPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMR
DAE.AIYGRNGYDYGQCRLRVEFPRT.GSRGG.WPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHM.
RetrocopyDAEGAIYGRNGYDYGQCRLRVEFPRTCGSRGG<WPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMQ
ParentalEAGDVCYADVQKDGMGMVVYPRKEDMEYALQILGDNKFRSHEECETF---YPEKCTSYGYSRSWSGSRGH
EAGDVCYADVQKDGMGMVVYPRKEDMEYAL..LGDNKF.SHE........Y.E..TSYGYSRS.SGSRGH
RetrocopyEAGDVCYADVQKDGMGMVVYPRKEDMEYALYKLGDNKFHSHEGETSYIRVYLERRTSYGYSRSRSGSRGH
ParentalDSPYQGRGSPHYFSPFRHL
DSPYQGRGSPHYFSPFRHL
RetrocopyDSPYQGRGSPHYFSPFRHL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tarsius syrichta was not studied using RNA-Seq expression data.
Tarsius syrichta was not studied using ChIP-Seq data.
Tarsius syrichta was not studied using EST data.
Tarsius syrichta was not studied using FANTOM5 data.
retro_tsyr_585 was not experimentally validated.

Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 15 parental genes, and 21 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000127921 retrocopy
Choloepus hoffmanni ENSCHOG000000092411 retrocopy
Callithrix jacchus ENSCJAG000000011871 retrocopy
Dasypus novemcinctus ENSDNOG000000125982 retrocopies
Homo sapiens ENSG000001117861 retrocopy
Macaca mulatta ENSMMUG000000164941 retrocopy
Nomascus leucogenys ENSNLEG000000156611 retrocopy
Otolemur garnettii ENSOGAG000000038521 retrocopy
Ochotona princeps ENSOPRG000000042341 retrocopy
Pongo abelii ENSPPYG000000050311 retrocopy
Sarcophilus harrisii ENSSHAG000000056851 retrocopy
Sus scrofa ENSSSCG000000099061 retrocopy
Tupaia belangeri ENSTBEG000000084991 retrocopy
Tarsius syrichta ENSTSYG00000006848 4 retrocopies
Tarsius syrichta ENSTSYG000000134983 retrocopies



Copyright © RetrogeneDB 2014-2017