RetrogeneDB ID: | retro_shar_598 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL856722.1:129839..130205(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SRSF9 | ||
Ensembl ID: | ENSSHAG00000005685 | ||
Aliases: | None | ||
Description: | serine/arginine-rich splicing factor 9 [Source:HGNC Symbol;Acc:10791] |
Percent Identity: | 57.26 % |
Parental protein coverage: | 74.68 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | SRRSEYRVLVSGPGLPPSGSWQD-LKDHMREAGGVCYADV-QKDG-MGVVEFLRKEDMEYALRRLDDSKF |
S.........S...L..SGS.QD.LKDH..EAGGVC.ADV.QKDG..GV..FL...DMEYAL..L.DSKF | |
Retrocopy | SQKQSWKANPSINQLTSSGS*QD<LKDHTGEAGGVCLADVVQKDG>QGVGKFLCNKDMEYALHVLNDSKF |
Parental | RSHEGETSYIRVYPER---STSYGYSRSRSGSRGRDSPYQSRGSPYYTSPYAPY |
.SHE.E.S.IRVY.......TSYGYS..RSGSRG.DS.Y.S..SP.Y.SP...Y | |
Retrocopy | HSHEDEASLIRVYAXXXXXTTSYGYSCFRSGSRGHDSSYRSSSSPNYSSPFTSY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000012792 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000009241 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000001187 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000012598 | 2 retrocopies | |
Homo sapiens | ENSG00000111786 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016494 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015661 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003852 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000004234 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005031 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000005685 | 1 retrocopy |
retro_shar_598 ,
|
Sarcophilus harrisii | ENSSHAG00000015970 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000009906 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000008499 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000006848 | 4 retrocopies |