RetrogeneDB ID: | retro_dnov_1555 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_234088:763..1283(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SRSF9 | ||
Ensembl ID: | ENSDNOG00000012598 | ||
Aliases: | None | ||
Description: | serine/arginine-rich splicing factor 9 [Source:HGNC Symbol;Acc:10791] |
Percent Identity: | 79.44 % |
Parental protein coverage: | 79.64 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 4 |
Parental | EDLFYKYGRIREIELKNRHGLVPFAFVRFEDP-RDAEDAIYGRNG-YDYGQCRLRVEFPRTYGGRGGWPR |
EDLFYKYG.I.EI.LKN.HGL.PF..V.FEDP.RDAEDAI.GRNG..D.GQCRLRVE.PR.YGG.GGWP. | |
Retrocopy | EDLFYKYGHIQEIKLKNQHGLMPF--VHFEDP<RDAEDAIFGRNG<FD*GQCRLRVE*PRSYGGWGGWPC |
Parental | GGRNGPPTRRSDFRVLVSGLPPSG-SWQDLKDHMREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDD |
GGRNGPPTRRSDF.VL.SGL.PS..SWQDLKDHM.EAGDVCYADVQKDGMGMVEYLRK.D.EY.L.KLDD | |
Retrocopy | GGRNGPPTRRSDF*VLLSGLLPSA<SWQDLKDHMQEAGDVCYADVQKDGMGMVEYLRK*DVEYVLLKLDD |
Parental | TKFRSHEGETSYIRVYPERSTSYGYSRSR-SGSRGRDSPY |
TKF.SHEGETS.IRVYPERSTSYGYS.SR......R.SPY | |
Retrocopy | TKFHSHEGETSSIRVYPERSTSYGYSCSR>CPYQSRGSPY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 69 .81 RPM |
SRP012922_cerebellum | 0 .00 RPM | 40 .97 RPM |
SRP012922_heart | 0 .00 RPM | 7 .43 RPM |
SRP012922_kidney | 0 .00 RPM | 58 .32 RPM |
SRP012922_liver | 0 .00 RPM | 39 .63 RPM |
SRP012922_lung | 0 .00 RPM | 49 .02 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 4 .50 RPM |
SRP012922_spleen | 0 .00 RPM | 48 .30 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000012792 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000009241 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000001187 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000000421 | 9 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000007821 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000012598 | 2 retrocopies |
retro_dnov_1555 , retro_dnov_2648,
|
Homo sapiens | ENSG00000111786 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016494 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015661 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003852 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000004234 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005031 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000005685 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000009906 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000008499 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000006848 | 4 retrocopies |