RetrogeneDB ID: | retro_tsyr_1648 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_53097:4176..4644(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SRSF9 | ||
Ensembl ID: | ENSTSYG00000006848 | ||
Aliases: | None | ||
Description: | serine/arginine-rich splicing factor 9 [Source:HGNC Symbol;Acc:10791] |
Percent Identity: | 82.28 % |
Parental protein coverage: | 72.43 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | DAEDAIYGRNGYDYGQCRLRVEFPRTYGSRGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMRE |
DAEDAIYGRN.YDYGQCRLRV.FPRTYGS.GGWP.GGRNG.PTRRSDF.V.VSGLPPSGSWQ.LKDHMRE | |
Retrocopy | DAEDAIYGRNDYDYGQCRLRVKFPRTYGSWGGWP*GGRNGTPTRRSDFQV-VSGLPPSGSWQNLKDHMRE |
Parental | AGDVCYADVQKDGMGMVVYPRKEDMEYALQILGDNKFRSHEECETF---YPEKCTSYGYSRSWSGSRGHD |
AG.VCY.DVQKDGMGMV.YPRK.DMEYAL..L.DNKF.SHE........YPE..TSYGYSRS.S.SRGHD | |
Retrocopy | AGAVCYTDVQKDGMGMVEYPRK-DMEYALCKLDDNKFCSHESETSYIRVYPERSTSYGYSRSGSRSRGHD |
Parental | SPYQGRGSPHYFSPFRHL |
SPYQGRGSPHYFSPFRHL | |
Retrocopy | SPYQGRGSPHYFSPFRHL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000012792 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000009241 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000001187 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000012598 | 2 retrocopies | |
Homo sapiens | ENSG00000111786 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016494 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015661 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003852 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000004234 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005031 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000005685 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000009906 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000008499 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000006848 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000013498 | 3 retrocopies |