RetrogeneDB ID: | retro_ogar_2328 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873612.1:150070..150625(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SRSF9 | ||
Ensembl ID: | ENSOGAG00000003852 | ||
Aliases: | None | ||
Description: | serine/arginine-rich splicing factor 9 [Source:HGNC Symbol;Acc:10791] |
Percent Identity: | 67.72 % |
Parental protein coverage: | 83.33 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | EKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDP-RDAEDAIYGRNGYDYGQ-CRLRVEFPRTYGGQG |
EKDL...FY.Y...RE.ELKN.HGL.PF.F.RFEDP.R.AE.AI.GRNGYDYG....LRVEFP.TY.G.G | |
Retrocopy | EKDLAGPFYEYDHVRETELKNPHGLMPFTFMRFEDP>REAEGAIFGRNGYDYGR<VGLRVEFPTTYRGRG |
Parental | GWPRGGR-NGPPTRRSDFRVLVSGLPPSGSW-QDLKDHMREAGDVCYADVQKDGMGMVEYLRKEDMEYAL |
GWPR..R..G..TRRSDF.VLV..L..SGSW.QDLK.H.REAG.VC..DVQKDGMGM.EYL.KED.EYA. | |
Retrocopy | GWPRSRR<DGLLTRRSDFGVLVTRLLSSGSW>QDLKSHPREAGGVCNPDVQKDGMGMAEYLKKEDVEYAP |
Parental | RKLDDTKFRSHEGETSYIRVYPERSTSYGYSRSRSGSRGRDSPYQSRGS |
RKL....FR.H.G.TS.IRV.PERSTSY.Y..S..G.RG.DSP.QSRGS | |
Retrocopy | RKLNGSQFRPHGGDTSNIRVCPERSTSYVYPQSQAGPRGGDSP*QSRGS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000012792 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000009241 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000001187 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000012598 | 2 retrocopies | |
Homo sapiens | ENSG00000111786 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016494 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015661 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000000502 | 6 retrocopies | |
Otolemur garnettii | ENSOGAG00000003852 | 1 retrocopy |
retro_ogar_2328 ,
|
Otolemur garnettii | ENSOGAG00000010169 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000015515 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000025950 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000004234 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005031 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000005685 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000009906 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000008499 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000006848 | 4 retrocopies |