Parental gene:

SRSF9, ENSSSCG00000009906

Aliases:None
Description:serine/arginine-rich splicing factor 9 [Source:HGNC Symbol;Acc:10791]
Organism:Pig (Sus scrofa)
Coordinates:14:42892688..42901227(-)


>ENSSSCG00000009906
ATGTCGGGCTGGGCGGACGAACGCGGCGGCGAGGGCGACGGGCGCATCTACGTGGGGAACCTTCCGACAGACGTGCGCGA
GAAGGACCTGGAGGACCTGTTCTACAAGTACGGCCGTATCCGCGAGATCGAGCTCAAGAATCGGCACGGCCTCGTGCCCT
TCGCCTTCGTGCGCTTTGAGGACCCCCGAGATGCTGAAGATGCCATTTATGGAAGGAACGGTTATGATTATGGCCAGTGT
CGCCTTCGTGTGGAGTTCCCCAGGACTTATGGAGGTCGGGGTGGGTGGCCCCGTGGTGGGAGGAATGGGCCTCCTACAAG
AAGATCTGATTTCCGAGTTCTTGTTTCAGGACTTCCTCCATCAGGCAGCTGGCAGGACCTGAAAGATCACATGCGAGAAG
CTGGGGACGTCTGTTACGCGGATGTACAGAAAGATGGAATGGGGATGGTTGAATATCTCAGAAAAGAAGACATGGAATAT
GCCCTGCGTAAACTGGATGACACCAAATTCCGCTCTCATGAGGGTGAAACTTCCTACATCCGAGTTTATCCAGAGAGAAG
CACCAGCTATGGCTACTCACGGTCTCGGTCTGGGTCAAGGGGCCGTGATTCTCCATACCAAAGCAGGGGTTCCCCACACT
ACTTCTCTCCTTTCAGACCCTACTGA

Library Parental gene expression (RPM)
SRP014902_placenta 93 .71 RPM
SRP014902_testis 86 .42 RPM
SRP018856_adipose 67 .66 RPM
SRP018288_kidney 58 .81 RPM
SRP018288_lung 36 .86 RPM
SRP018288_liver 30 .86 RPM
SRP018288_heart 11 .24 RPM
SRP035408_liver 39 .31 RPM
SRP035408_brain 29 .51 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000012792 ortholog_one2one 1 retrogene
retro_btau_837,
Choloepus hoffmanni ENSCHOG00000009241 ortholog_one2one 1 retrogene
retro_chof_1119,
Callithrix jacchus ENSCJAG00000001187 ortholog_one2one 1 retrogene
retro_cjac_442,
Dasypus novemcinctus ENSDNOG00000012598 ortholog_one2one 2 retrogenes
retro_dnov_1555, retro_dnov_2648,
Homo sapiens ENSG00000111786 ortholog_one2one 1 retrogene
retro_hsap_2530,
Macaca mulatta ENSMMUG00000016494 ortholog_one2one 1 retrogene
retro_mmul_2154,
Nomascus leucogenys ENSNLEG00000015661 ortholog_one2one 1 retrogene
retro_nleu_1931,
Otolemur garnettii ENSOGAG00000003852 ortholog_one2one 1 retrogene
retro_ogar_2328,
Ochotona princeps ENSOPRG00000004234 ortholog_one2one 1 retrogene
retro_opri_878,
Pongo abelii ENSPPYG00000005031 ortholog_one2many 1 retrogene
retro_pabe_119,
Sarcophilus harrisii ENSSHAG00000005685 ortholog_one2one 1 retrogene
retro_shar_598,
Sus scrofa ENSSSCG00000001564 other_paralog 1 retrogene
retro_sscr_1038,
Tupaia belangeri ENSTBEG00000008499 ortholog_one2one 1 retrogene
retro_tbel_2602,
Tarsius syrichta ENSTSYG00000006848 ortholog_one2one 4 retrogenes
retro_tsyr_1432, retro_tsyr_1648, retro_tsyr_585, retro_tsyr_891,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_745 85.93 90.05
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Download FASTA sequences of all ENSSSCG00000009906 retrocopies