RetrogeneDB ID: | retro_btau_971 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 22:20199548..20199999(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TSEN15 | ||
Ensembl ID: | ENSBTAG00000016369 | ||
Aliases: | TSEN15, C16H1ORF19 | ||
Description: | tRNA-splicing endonuclease subunit Sen15 [Source:RefSeq peptide;Acc:NP_001069780] |
Percent Identity: | 82.35 % |
Parental protein coverage: | 89.29 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | GDDRGGGSAHPWAP-EDAWMGTHPKYLEMMELDIGDATQVYIAFLVYLDLMESKSWHEVNCVGLPDLQLI |
G.D.GGGSAHP.AP.ED.WMGTHPKYLEMMEL.I.DATQ.Y.AFL..LDL..SKSWHEVNCVGL.DLQLI | |
Retrocopy | GGDCGGGSAHPRAP>EDTWMGTHPKYLEMMELIIRDATQAYTAFLACLDLIVSKSWHEVNCVGLLDLQLI |
Parental | CLLGTEIEGE-GLQTVVPTPISASLSHNRIREILKASRKLQGDPD-LPTSFTLAIVESDSTIVYYKLTDG |
.LL.TE.E.E.GLQ.VVPTPISASLSHNRIR.ILKAS.K.QGDPD.LP.SFTLAIVESDST.VYYKLTDG | |
Retrocopy | HLLSTETEAE>GLQSVVPTPISASLSHNRIRGILKAS*K*QGDPD<LPMSFTLAIVESDSTTVYYKLTDG |
Parental | FMLPDPQNISLRR |
FMLPDP.NISLRR | |
Retrocopy | FMLPDPKNISLRR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 33 .74 RPM |
ERP005899_muscle | 0 .00 RPM | 7 .76 RPM |
SRP017611_brain | 0 .00 RPM | 23 .11 RPM |
SRP017611_kidney | 0 .00 RPM | 16 .54 RPM |
SRP017611_liver | 0 .00 RPM | 8 .83 RPM |
SRP030211_testis | 0 .00 RPM | 14 .47 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000016369 | 1 retrocopy |
retro_btau_971 ,
|
Callithrix jacchus | ENSCJAG00000005356 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000017611 | 2 retrocopies | |
Homo sapiens | ENSG00000198860 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000015804 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000014109 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016409 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000011790 | 1 retrocopy | |
Mus musculus | ENSMUSG00000014980 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000018024 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003128 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000000421 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000023202 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000001103 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000013230 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000002941 | 2 retrocopies |