RetrogeneDB ID: | retro_mmul_1214 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 16:17365843..17366216(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TSEN15 | ||
Ensembl ID: | ENSMMUG00000016409 | ||
Aliases: | None | ||
Description: | tRNA splicing endonuclease 15 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:16791] |
Percent Identity: | 83.46 % |
Parental protein coverage: | 72.51 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | EMMELDIGDATQVYIAFLVYLDLMESKSW-HEVNCVGLPELQLICLVGT-EIEGEGLQTVVPTPITASLS |
EMMELDI.DAT.VYIAFL.YLDL.ESK...HEVNCV.LPELQLICLV...EIE.E.LQTV.PTPITASLS | |
Retrocopy | EMMELDIEDATHVYIAFLIYLDLIESKTD<HEVNCVRLPELQLICLVSM<EIEEERLQTVAPTPITASLS |
Parental | HNRIREILKASRKLQGDPDL-PMSFTLAIVESDSTIVYYKLTDGFMLPDPQNISLRR |
HNRIREILKAS.KLQGDPDL..MSFTL.IVESDSTIV.YK.TDG.MLPDPQNISLRR | |
Retrocopy | HNRIREILKAS*KLQGDPDL*KMSFTLVIVESDSTIVFYKFTDGLMLPDPQNISLRR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 9 .41 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 8 .73 RPM |
SRP007412_cerebellum | 0 .00 RPM | 12 .98 RPM |
SRP007412_heart | 0 .00 RPM | 9 .60 RPM |
SRP007412_kidney | 0 .00 RPM | 7 .98 RPM |
SRP007412_liver | 0 .00 RPM | 6 .06 RPM |
SRP007412_testis | 0 .00 RPM | 4 .52 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1721 |
Pan troglodytes | retro_ptro_1229 |
Gorilla gorilla | retro_ggor_2267 |
Pongo abelii | retro_pabe_1436 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000016369 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000005356 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000017611 | 2 retrocopies | |
Homo sapiens | ENSG00000198860 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000015804 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000014109 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016409 | 1 retrocopy |
retro_mmul_1214 ,
|
Mustela putorius furo | ENSMPUG00000011790 | 1 retrocopy | |
Mus musculus | ENSMUSG00000014980 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000018024 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003128 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000000421 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000023202 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000001103 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000013230 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000002941 | 2 retrocopies |