RetrogeneDB ID: | retro_itri_1538 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393533.1:1688451..1688904(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TSEN15 | ||
Ensembl ID: | ENSSTOG00000013230 | ||
Aliases: | None | ||
Description: | tRNA splicing endonuclease 15 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:16791] |
Percent Identity: | 83.12 % |
Parental protein coverage: | 91.67 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | GLDSGGVRDGGGAHKWTPADAWMSTHPKYLEMMELNIGDASQVYIAFLVYLDLMESKSWYEVNCVGLPEL |
GLD.GG.R.GG...KWT..DA.MSTHPKYLEM.ELNIGDA.QVYIAFLV..DL.E.KSWY...CVGLPEL | |
Retrocopy | GLDLGGFRNGG---KWTLVDACMSTHPKYLEMIELNIGDATQVYIAFLV*MDLTENKSWYDIICVGLPEL |
Parental | QLICLVGTEIEGEGLQTVLPTPISASLSHQRIRDILKASQKLRGNPDLPMSFTLAIVESDSTIVYYKLTD |
QLICL..TEIEGEGLQTVLPTPISASLS.QRIR.ILKASQKL.GNPDLPMSFTLAI.ESDSTIV.YKLT. | |
Retrocopy | QLICLIDTEIEGEGLQTVLPTPISASLSYQRIRNILKASQKL*GNPDLPMSFTLAILESDSTIV*YKLTE |
Parental | GFMLPDPQNITLRR |
GFMLPDPQNITLRR | |
Retrocopy | GFMLPDPQNITLRR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000016369 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000005356 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000017611 | 2 retrocopies | |
Homo sapiens | ENSG00000198860 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000015804 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000014109 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016409 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000011790 | 1 retrocopy | |
Mus musculus | ENSMUSG00000014980 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000018024 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003128 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000000421 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000023202 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000001103 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000013230 | 2 retrocopies |
retro_itri_1538 , retro_itri_1849,
|
Vicugna pacos | ENSVPAG00000002941 | 2 retrocopies |