RetrogeneDB ID: | retro_hsap_1721 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 17:17360205..17360570(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000230865 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TSEN15 | ||
Ensembl ID: | ENSG00000198860 | ||
Aliases: | TSEN15, C1orf19, sen15 | ||
Description: | tRNA splicing endonuclease 15 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:16791] |
Percent Identity: | 88.62 % |
Parental protein coverage: | 71.35 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MELDIGDATQVYVAFLVYLDLMESKS-WHEVNCVGLPELQLICLVGTEIEGEGLQTVVPTPITASLSHNR |
MELD..DAT.VY.AFLVYLDL.ESK..WHE.NCV.LPELQLICLVGTEIE.EGLQTVVPTPITASLSHNR | |
Retrocopy | MELDTEDATHVYIAFLVYLDLIESKT<WHELNCVRLPELQLICLVGTEIEEEGLQTVVPTPITASLSHNR |
Parental | IREILKASRKLQGDPDLPMSFTLAIVESDSTIVYYKLTDGFMLPDPQNISLRR |
IREILKAS.KL.GDPDL.MSFTLAI.ESDSTIVYYKLTDGFMLPDPQNISLRR | |
Retrocopy | IREILKAS*KLPGDPDLLMSFTLAIMESDSTIVYYKLTDGFMLPDPQNISLRR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 14 .61 RPM |
bodymap2_adrenal | 0 .00 RPM | 27 .80 RPM |
bodymap2_brain | 0 .05 RPM | 28 .41 RPM |
bodymap2_breast | 0 .00 RPM | 24 .24 RPM |
bodymap2_colon | 0 .00 RPM | 23 .55 RPM |
bodymap2_heart | 0 .02 RPM | 17 .69 RPM |
bodymap2_kidney | 0 .02 RPM | 22 .69 RPM |
bodymap2_liver | 0 .00 RPM | 13 .52 RPM |
bodymap2_lung | 0 .00 RPM | 16 .10 RPM |
bodymap2_lymph_node | 0 .00 RPM | 21 .73 RPM |
bodymap2_ovary | 0 .00 RPM | 42 .87 RPM |
bodymap2_prostate | 0 .21 RPM | 25 .03 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 16 .01 RPM |
bodymap2_testis | 0 .00 RPM | 32 .73 RPM |
bodymap2_thyroid | 0 .02 RPM | 25 .99 RPM |
bodymap2_white_blood_cells | 0 .02 RPM | 34 .28 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1229 |
Gorilla gorilla | retro_ggor_2267 |
Pongo abelii | retro_pabe_1436 |
Macaca mulatta | retro_mmul_1214 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000016369 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000005356 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000017611 | 2 retrocopies | |
Homo sapiens | ENSG00000198860 | 1 retrocopy |
retro_hsap_1721 ,
|
Gorilla gorilla | ENSGGOG00000015804 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000014109 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016409 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000011790 | 1 retrocopy | |
Mus musculus | ENSMUSG00000014980 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000018024 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003128 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000000421 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000023202 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000001103 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000013230 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000002941 | 2 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .03 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .06 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .02 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .02 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |