RetrogeneDB ID:

retro_ogar_3264

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873758.1:155235..155597(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:TSEN15
Ensembl ID:ENSOGAG00000003128
Aliases:None
Description:tRNA splicing endonuclease 15 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:16791]


Retrocopy-Parental alignment summary:






>retro_ogar_3264
ATGGAAGAAGGTGGTGATTCTGAGCCAGTCCCTGGCTGCAGTGGGCTGGGGCTGGGTGGCATTCATGGTGGTAGCAGTGC
TCACTGGTGAGTCCCCAAAGAGGCCTAGATGGGTTCCACCCTAAATATTTAGAAATGATGGAATTACCTATAGGAGATGT
CACCCAAGTTTATGTAGCATTCCTGGTTTACCTGAACCTCATAGAGAGTAAAAGTTGGCATGAAGTGAACTGTGTGAGAT
TACCAAAGCTCTAGCTCATCTGCCTTGTGGGCCCTGAGATAGAAGAGGAATAGTTACAGACTGTGGTGCCAACCTCTATC
ACTGCTTCCTTGAGCCATAACAGGACAAGGGAAAATTGCAAG

ORF - retro_ogar_3264 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 77.05 %
Parental protein coverage: 72.02 %
Number of stop codons detected: 4
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMEEGGDSEPVPGCSGLGPGGVRGGSGAHSWAPEDAWMGS-HPKYLEMMELAIGDASQVYIAFLVYLDLME
MEEGGDSEPVPGCSGLG.GG..GGS.AH...P..A.MGS.HPKYLEMMEL.IGD..QVY.AFLVYL.L.E
RetrocopyMEEGGDSEPVPGCSGLGLGGIHGGSSAHW*VPKEA*MGS<HPKYLEMMELPIGDVTQVYVAFLVYLNLIE
ParentalSKSWHEVNCVGLPELQLICLVGTEIEGEGLQTVVPTSVTASFSHNRIREILK
SKSWHEVNCV.LP.L.LICLVG.EIE.E.LQTVVPTS.TAS.SHNR.RE..K
RetrocopySKSWHEVNCVRLPKL*LICLVGPEIEEE*LQTVVPTSITASLSHNRTRENCK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_3264 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 16 parental genes, and 24 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000163691 retrocopy
Callithrix jacchus ENSCJAG000000053561 retrocopy
Dasypus novemcinctus ENSDNOG000000176112 retrocopies
Homo sapiens ENSG000001988601 retrocopy
Gorilla gorilla ENSGGOG000000158042 retrocopies
Loxodonta africana ENSLAFG000000141091 retrocopy
Macaca mulatta ENSMMUG000000164091 retrocopy
Mustela putorius furoENSMPUG000000117901 retrocopy
Mus musculus ENSMUSG000000149801 retrocopy
Nomascus leucogenys ENSNLEG000000180241 retrocopy
Otolemur garnettii ENSOGAG00000003128 1 retrocopy
retro_ogar_3264 ,
Pongo abelii ENSPPYG000000004214 retrocopies
Pan troglodytes ENSPTRG000000232022 retrocopies
Pteropus vampyrus ENSPVAG000000011031 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000132302 retrocopies
Vicugna pacos ENSVPAG000000029412 retrocopies



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