RetrogeneDB ID: | retro_vpac_565 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_47170:3183..3443(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TSEN15 | ||
Ensembl ID: | ENSVPAG00000002941 | ||
Aliases: | None | ||
Description: | tRNA splicing endonuclease 15 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:16791] |
Percent Identity: | 53.33 % |
Parental protein coverage: | 62.68 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | PSWAPEDDWKGTHPKYLE-MMELDIGDATQVYIAFLVYLDLMERINWHEVNCVGLPDLQLICLFGNEIEG |
P..APED.W.GTHPKYL..MME.D.G.A.Q.Y.AF.VY.DL.E...WH.VN.V..P...L.CL.G.E.E. | |
Retrocopy | PRGAPEDAWMGTHPKYLQ<MME*DRGAAAQAYMAFFVYQDLVEGRRWHKVNGVERPQCGLTCLLGTETE- |
Parental | EGLQTVVPTPINASLSHNRI |
EG.....P.P..ASL...R. | |
Retrocopy | EGFR-LAPIPTGASLNRDRL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000016369 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000005356 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000017611 | 2 retrocopies | |
Homo sapiens | ENSG00000198860 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000015804 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000014109 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016409 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000011790 | 1 retrocopy | |
Mus musculus | ENSMUSG00000014980 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000018024 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003128 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000000421 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000023202 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000001103 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000013230 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000002941 | 2 retrocopies |
retro_vpac_381, retro_vpac_565 ,
|