RetrogeneDB ID: | retro_btau_973 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 22:36737620..36738154(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000019048 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BT.29898 | ||
Ensembl ID: | ENSBTAG00000019441 | ||
Aliases: | None | ||
Description: | mediator of RNA polymerase II transcription subunit 28 [Source:RefSeq peptide;Acc:NP_001033627] |
Percent Identity: | 91.01 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAAPLGGMFSGQPPGPPQPPPGLLGQASLLQATPGVPRTSNSTLVDELESSFEACFASLVSQDYVNGTDQ |
..APLGGMFSGQP..PPQPP.GLLGQASLLQATPGVPRTSNS.LVD.LES.F.ACFASLVSQ.YVNGTDQ | |
Retrocopy | LSAPLGGMFSGQPLRPPQPPSGLLGQASLLQATPGVPRTSNSILVDKLESYFKACFASLVSQNYVNGTDQ |
Parental | EEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPEQVIKEDVSELRNELQRKDALVQKHLTKLRHWQ |
EEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPEQVIKEDVSELRNELQR.DALV.KHLTKLRHWQ | |
Retrocopy | EEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPEQVIKEDVSELRNELQREDALVPKHLTKLRHWQ |
Parental | QVLEDINMQHKKPADIPQGSLAYLEQASANIPAPMKQT |
QVLEDINMQHKKPADIPQG.LAYLEQA.AN..APMKQT | |
Retrocopy | QVLEDINMQHKKPADIPQGALAYLEQAPANTRAPMKQT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 9 .16 RPM |
ERP005899_muscle | 0 .00 RPM | 19 .85 RPM |
SRP017611_brain | 0 .09 RPM | 46 .36 RPM |
SRP017611_kidney | 0 .36 RPM | 20 .51 RPM |
SRP017611_liver | 0 .00 RPM | 8 .00 RPM |
SRP030211_testis | 0 .06 RPM | 18 .26 RPM |