RetrogeneDB ID: | retro_ggor_1534 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 20:26322006..26322530(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MED28 | ||
Ensembl ID: | ENSGGOG00000001114 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.74 % |
Parental protein coverage: | 98.88 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | APLGGMFSGQPPGPPQAPPGLPGQASLLQAAPGAPRPSSST-LVDELESSFEACFASLVSQDYVNGTDQE |
APLGGMFS.QPPGPP.....L.GQASL.QAAP...RPS.ST.L..ELESSFEACFASLVSQDYVNGTDQE | |
Retrocopy | APLGGMFSWQPPGPPLPTLELRGQASL-QAAPDTLRPSHST<LANELESSFEACFASLVSQDYVNGTDQE |
Parental | EIRTGVDQCIQKFLDIARQTECF-FLQKRLQLSVQKPEQVIKEDVSELRNELQRKDALVQKHLTKLRHWQ |
.I.T.VDQ.I..FLDIA.Q.ECF....KRLQL.VQ.PEQV.KEDVSELRNELQ.K..LV.KHLTKLRHWQ | |
Retrocopy | NIQTAVDQYI*EFLDIATQAECF<SYKKRLQLFVQTPEQVTKEDVSELRNELQQKYTLVKKHLTKLRHWQ |
Parental | QVLEDI-NVQHKKPADIPQGSLAYLEQASANIPAPLKPT |
QVL..I.NVQH..P...PQGS..YL.QASANIPAP.K.T | |
Retrocopy | QVLKGI>NVQHRTPGSSPQGSSTYLKQASANIPAPQKLT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .14 RPM | 16 .35 RPM |
SRP007412_cerebellum | 0 .55 RPM | 16 .47 RPM |
SRP007412_heart | 0 .03 RPM | 5 .94 RPM |
SRP007412_kidney | 0 .16 RPM | 10 .59 RPM |
SRP007412_liver | 0 .26 RPM | 8 .20 RPM |
SRP007412_testis | 0 .21 RPM | 23 .10 RPM |