RetrogeneDB ID: | retro_itri_1660 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393614.1:335255..335540(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MED28 | ||
Ensembl ID: | ENSSTOG00000000930 | ||
Aliases: | None | ||
Description: | mediator complex subunit 28 [Source:HGNC Symbol;Acc:24628] |
Percent Identity: | 56.7 % |
Parental protein coverage: | 52.81 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MAAPLGGM-FSGQPPGPP-HPPPGLPGQASLLQAAPGAPRTSSSTLVDELESSFEACFASLVSQDYVNGT |
M.APLG.M.F...PP.P...P.PGL....S............S..LVD.LE..F.AC.ASL.SQDYVNGT | |
Retrocopy | MTAPLGSMLFQRPPPPPG<TPGPGLTSSGSARHLKNFENLVNSKNLVDKLE*LFKACLASLMSQDYVNGT |
Parental | DQEEIRTGVDQCIQKFLDIARQT-ECF |
.QEEI.T.VDQCIQKFLD..RQT.EC. | |
Retrocopy | NQEEI*TVVDQCIQKFLDSVRQT>ECY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |