Parental gene:

MED28, ENSCJAG00000012711

Aliases:None
Description:mediator complex subunit 28 [Source:HGNC Symbol;Acc:24628]
Organism:Marmoset (Callithrix jacchus)
Coordinates:3:173681452..173690888(-)


>ENSCJAG00000012711
ATGGCGGCTCCGCTAGGTGGAATGTTTTCTGGGCAGCCACCTGGGCCCCCACAGCCCCCGCCGGGCCTCCCGGGCCAAGC
TTCGCTTCTTCAGGCAGCTCCAGGCGCTCCTAGACCTTCCAACAGTACTTTGGTGGACGAGTTGGAGTCATCTTTCGAGG
CTTGCTTTGCATCTCTGGTGAGTCAGGACTATGTCAGTGGCACTGATCAGGAAGAAATTCGAACTGGTGTTGATCAGTGT
ATCCAGAAGTTTCTGGATATCGCAAGACAGACAGAGTGTTTTTTCTTACAAAAAAGATTGCAGTTATCTGTCCAGAAACC
AGAGCAAGTTATCAAAGAGGATGTCTCAGAACTAAGGAATGAATTACAGCGGAAAGATGCACTAGTCCAGAAGCACTTGA
CAAAGCTGAGGCACTGGCAGCAGGTGCTGGAGGACATCAATGTGCAGCACAAAAAGCCAGCCGACATCCCTCAGGGCTCC
TTGGCCTACCTGGCAGGCATCTGCCAACATCCCTGCACCTCTGAAGCCAACCTAAGCCAAGGGCTAAGGCACTTGGACTG
TGAGTGGGCTGGTGCGTGA

Library Parental gene expression (RPM)
SRP051959_spleen 31 .18 RPM
SRP051959_skeletal_muscle 19 .65 RPM
SRP051959_lymph_node 31 .46 RPM
SRP051959_lung 33 .82 RPM
SRP051959_liver 24 .87 RPM
SRP051959_kidney 26 .85 RPM
SRP051959_heart 16 .61 RPM
SRP051959_colon 20 .86 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000001760 ortholog_one2one 1 retrogene
retro_amel_1649,
Bos taurus ENSBTAG00000019441 ortholog_one2one 1 retrogene
retro_btau_973,
Cavia porcellus ENSCPOG00000012616 ortholog_one2one 2 retrogenes
retro_cpor_1165, retro_cpor_207,
Dasypus novemcinctus ENSDNOG00000008526 ortholog_one2one 2 retrogenes
retro_dnov_2276, retro_dnov_2595,
Dipodomys ordii ENSDORG00000008042 ortholog_one2one 1 retrogene
retro_dord_116,
Homo sapiens ENSG00000118579 ortholog_one2one 5 retrogenes
retro_hsap_2188, retro_hsap_2465, retro_hsap_2860, retro_hsap_589, retro_hsap_919,
Gorilla gorilla ENSGGOG00000001114 ortholog_one2one 5 retrogenes
retro_ggor_1534, retro_ggor_1733, retro_ggor_1978, retro_ggor_409, retro_ggor_519,
Loxodonta africana ENSLAFG00000016936 ortholog_one2one 1 retrogene
retro_lafr_693,
Microcebus murinus ENSMICG00000006792 ortholog_one2one 2 retrogenes
retro_mmur_1172, retro_mmur_545,
Myotis lucifugus ENSMLUG00000001351 ortholog_one2many 1 retrogene
retro_mluc_1997,
Macaca mulatta ENSMMUG00000005734 ortholog_one2one 5 retrogenes
retro_mmul_1468, retro_mmul_2453, retro_mmul_507, retro_mmul_639, retro_mmul_916,
Monodelphis domestica ENSMODG00000000813 ortholog_one2one 1 retrogene
retro_mdom_1175,
Nomascus leucogenys ENSNLEG00000016620 ortholog_one2one 3 retrogenes
retro_nleu_2816, retro_nleu_284, retro_nleu_317,
Oryctolagus cuniculus ENSOCUG00000001576 ortholog_one2one 4 retrogenes
retro_ocun_1473, retro_ocun_1474, retro_ocun_337, retro_ocun_444,
Otolemur garnettii ENSOGAG00000033835 ortholog_one2one 4 retrogenes
retro_ogar_2031, retro_ogar_3387, retro_ogar_493, retro_ogar_998,
Ochotona princeps ENSOPRG00000003932 ortholog_one2one 2 retrogenes
retro_opri_134, retro_opri_382,
Pongo abelii ENSPPYG00000014627 ortholog_one2one 4 retrogenes
retro_pabe_1811, retro_pabe_2068, retro_pabe_2363, retro_pabe_601,
Pan troglodytes ENSPTRG00000015939 ortholog_one2one 3 retrogenes
retro_ptro_1424, retro_ptro_1666, retro_ptro_431,
Pteropus vampyrus ENSPVAG00000015716 ortholog_one2one 1 retrogene
retro_pvam_641,
Ictidomys tridecemlineatus ENSSTOG00000000930 ortholog_one2one 10 retrogenes
retro_itri_1064, retro_itri_1201, retro_itri_1437, retro_itri_1622, retro_itri_1660, retro_itri_1671, retro_itri_176, retro_itri_236, retro_itri_462, retro_itri_770,
Tursiops truncatus ENSTTRG00000006177 ortholog_one2one 1 retrogene
retro_ttru_484,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_848 69.17 72.47
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2. retro_cjac_1545 60.53 62.92
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3. retro_cjac_1708 89.44 90.45
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4. retro_cjac_2117 84.54 99.48
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5. retro_cjac_2603 65.22 81.25
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6. retro_cjac_2746 72.05 89.33
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7. retro_cjac_3016 71.95 91.01
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8. retro_cjac_4156 83.33 80.34
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Download FASTA sequences of all ENSCJAG00000012711 retrocopies