RetrogeneDB ID: | retro_dnov_2276 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_6041:82755..83278(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MED28 | ||
Ensembl ID: | ENSDNOG00000008526 | ||
Aliases: | None | ||
Description: | mediator complex subunit 28 [Source:HGNC Symbol;Acc:24628] |
Percent Identity: | 84.44 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MAAPLGGMFSGQPPGPPGPPPGLPGQASLLQAAPGAQRISNSTLVDELESSFEACFASLVSQDYVSGTDQ |
M.A.LGGMFSGQ...P.GP.PGL.GQA.LLQA.PGA.RIS.STLVD.LESSFEACFASLVSQDYVS.T.Q | |
Retrocopy | MVALLGGMFSGQ---PLGPLPGLQGQALLLQAMPGAPRISKSTLVDDLESSFEACFASLVSQDYVSETNQ |
Parental | EEIRTGVDQCIQKFLDIARQTE-CFFLQK-RLQLSVQKPDQVIKEDVSELRNELQRKDALVQKHLTKLRH |
EEIRTGVD.CIQKFLDIARQTE..FFLQK.RL...VQKP.QVIKEDVSEL.NELQ.KD.LVQKHLTKLRH | |
Retrocopy | EEIRTGVDHCIQKFLDIARQTE<IFFLQK<RLHFYVQKPEQVIKEDVSELGNELQQKDVLVQKHLTKLRH |
Parental | WQQVLDDINVQHKKPAEIPQASLAYLEQASANIPAPMKQT |
WQQVLDDINVQHKKP.EIPQ.SLAYLEQASANIPAPMKQT | |
Retrocopy | WQQVLDDINVQHKKPTEIPQESLAYLEQASANIPAPMKQT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 19 .45 RPM |
SRP012922_cerebellum | 0 .00 RPM | 20 .62 RPM |
SRP012922_heart | 0 .00 RPM | 6 .73 RPM |
SRP012922_kidney | 0 .00 RPM | 12 .05 RPM |
SRP012922_liver | 0 .00 RPM | 9 .13 RPM |
SRP012922_lung | 0 .00 RPM | 22 .76 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 26 .83 RPM |
SRP012922_spleen | 0 .00 RPM | 36 .28 RPM |