RetrogeneDB ID: | retro_pabe_2363 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 3:151876298..151876622(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MED28 | ||
Ensembl ID: | ENSPPYG00000014627 | ||
Aliases: | None | ||
Description: | mediator complex subunit 28 [Source:HGNC Symbol;Acc:24628] |
Percent Identity: | 62.28 % |
Parental protein coverage: | 62.92 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | VNGT-DQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPEQVIKEDVSELRNELQRKDALVQKHL |
VNGT..Q.EI.TGV..CIQKFL.IARQ...F..QK.LQLS..KPEQ.I..D...LRN.L..KD.LV.KHL | |
Retrocopy | VNGT>NQGEIQTGVEKCIQKFLGIARQN-FFSYQKILQLSFRKPEQGIQKDMLALRNKL*WKDVLVKKHL |
Parental | TKLRHWQQVLEDINVQHK-KPADIPQGSLAYLEQASANIPAPLK |
.K.R...QVL..IN..HK.KP..IPQ..L.YLE.ASANIPAP.K | |
Retrocopy | IKQR---QVLDNINREHK<KPSEIPQENLMYLEKASANIPAPVK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 8 .74 RPM |
SRP007412_cerebellum | 0 .00 RPM | 8 .51 RPM |
SRP007412_heart | 0 .00 RPM | 7 .71 RPM |
SRP007412_kidney | 0 .00 RPM | 7 .16 RPM |
SRP007412_liver | 0 .00 RPM | 6 .85 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2860 |
Gorilla gorilla | retro_ggor_1978 |
Macaca mulatta | retro_mmul_1468 |
Callithrix jacchus | retro_cjac_1545 |