RetrogeneDB ID: | retro_mmul_639 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 10:58866937..58867348(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MED28 | ||
Ensembl ID: | ENSMMUG00000005734 | ||
Aliases: | None | ||
Description: | mediator complex subunit 28 [Source:HGNC Symbol;Acc:24628] |
Percent Identity: | 71.63 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | MAAPLGGMFSGQPPGPPQAPPGLPGQASLLQAAPGAPRPSNST-LVDELESSFEACFASLVSQDYVNGTD |
M.APLG.MFS.Q.PG.P.....L.GQASLLQAAP...RPSNST..V.ELESSF.AC.ASLVS.DYVNG.D | |
Retrocopy | MVAPLGDMFS*QLPGIPPPTLELRGQASLLQAAPDTLRPSNST<RVNELESSFKACLASLVSEDYVNGID |
Parental | QEEIRTGVDQCIQKFLDIARQTEC-FFLQKRLQLSVQKPEQVIKEDVSELRNELQRKDAL-VQKHLTKLR |
QE.I.TGVDQ.I..FLDIA.Q.EC.F...KRLQL.VQ.PEQV.KEDVSELRNELQ.K..L.VQK.LTKLR | |
Retrocopy | QENI*TGVDQYI*EFLDIATQAEC<FSYRKRLQLFVQTPEQVTKEDVSELRNELQQKHTL<VQKYLTKLR |
Parental | H |
H | |
Retrocopy | H |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 1 .01 RPM | 8 .40 RPM |
SRP007412_brain_prefrontal_cortex | 0 .79 RPM | 6 .90 RPM |
SRP007412_cerebellum | 0 .71 RPM | 7 .81 RPM |
SRP007412_heart | 0 .29 RPM | 5 .18 RPM |
SRP007412_kidney | 0 .70 RPM | 7 .86 RPM |
SRP007412_liver | 0 .00 RPM | 3 .05 RPM |
SRP007412_testis | 0 .15 RPM | 9 .99 RPM |