RetrogeneDB ID: | retro_pabe_601 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 10:66512524..66512973(-) | ||
Located in intron of: | ENSPPYG00000002388 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MED28 | ||
Ensembl ID: | ENSPPYG00000014627 | ||
Aliases: | None | ||
Description: | mediator complex subunit 28 [Source:HGNC Symbol;Acc:24628] |
Percent Identity: | 77.27 % |
Parental protein coverage: | 83.71 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | LQAAPGAPRPSSSTLVDELESSFEACFASLVSQDYVNGTDQEEIRTGVDQCIQKFLDIARQTECF-FLQK |
L.AAPGA.RPS.STLVD..ESSF..CFASLVSQDYVNG..QEEI.T.VDQCI.KFLDIARQTE.F.FLQK | |
Retrocopy | LPAAPGALRPSNSTLVDDVESSFQTCFASLVSQDYVNGSNQEEIGTAVDQCIHKFLDIARQTEYF>FLQK |
Parental | RLQLS-VQKPEQVIKE--DVSELRNELQRKDALVQKHLTKLRHWQQVLEDI-NVQHKKPADIPQGSLAYL |
RLQLS.VQKPEQVI.E..DVS.LRNE.....ALVQKHLTKLRHWQQVLE.I..VQ.KK.ADI.QGSL.YL | |
Retrocopy | RLQLS<VQKPEQVISEDVDVSKLRNE*HWRHALVQKHLTKLRHWQQVLEVI<HVQYKKLADIRQGSLVYL |
Parental | EQASANIPAPLKPT |
EQA..NIPA.LK.T | |
Retrocopy | EQA-FNIPALLKCT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 8 .74 RPM |
SRP007412_cerebellum | 0 .00 RPM | 8 .51 RPM |
SRP007412_heart | 0 .00 RPM | 7 .71 RPM |
SRP007412_kidney | 0 .00 RPM | 7 .16 RPM |
SRP007412_liver | 0 .06 RPM | 6 .85 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_589 |
Pan troglodytes | retro_ptro_431 |
Gorilla gorilla | retro_ggor_519 |