RetrogeneDB ID: | retro_lafr_693 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_30:27815320..27815851(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MED28 | ||
Ensembl ID: | ENSLAFG00000016936 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80.56 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MAAPLGGMFSGQPPGPPPP-PPGLPGQASLLQAAPGAPRTSNITLVDELESSFETCFASLVSQDYVNGTD |
M.A.LG.MFSGQP.GPPPP.P.GL.GQA.LLQA.PG....SNITL.DELES.F.TCFA.LVSQDY.NGTD | |
Retrocopy | MVALLGSMFSGQPQGPPPP<PVGLLGQALLLQAMPGD*KSSNITLMDELESTFVTCFAPLVSQDYINGTD |
Parental | QEEIRTGVDQCIQKFLDIARQTECFFLQK-RLQLSVQKPEQVIKEDVSELRNELQRKDALVQKHLTKLRH |
QEEI.TGVDQCIQKFLD.ARQ...FFLQK.RL.LS.QKPEQVIKEDV.ELRNELQ.K.ALVQKHL.KL.H | |
Retrocopy | QEEI*TGVDQCIQKFLDVARQN-VFFLQK>RLHLSAQKPEQVIKEDVLELRNELQQKGALVQKHLIKLWH |
Parental | WQQVLDDINVQHKKPADLPQGSLAYLEQASANIP-PLKQT |
WQQVLDDIN.QHKKPADLPQ.SLAYLEQASANIP.P.KQT | |
Retrocopy | WQQVLDDINMQHKKPADLPQESLAYLEQASANIPMPMKQT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |