RetrogeneDB ID: | retro_ggor_519 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 10:81463304..81463834(+) | ||
Located in intron of: | ENSGGOG00000012793 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MED28 | ||
Ensembl ID: | ENSGGOG00000001114 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.17 % |
Parental protein coverage: | 98.88 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | APLGGMFSGQPPG-PPQAPPGLPGQASLLQAAPGAPRPSSSTLVDELESSFEACFASLVSQDYVNGTDQE |
A.LG.MF.GQP.G..P.....L......L.AAPGA.RPS.STLVD..ESSF..CFASL.SQDYV.G..QE | |
Retrocopy | ALLGSMFFGQPSG<APTTTGALGPGFPYLPAAPGALRPSNSTLVDDMESSFQTCFASLLSQDYVSGSNQE |
Parental | EIRTGVDQCIQKFLDIARQTECF-FLQKRLQLSVQKPEQVIK--EDVSELRNELQRKDALVQKHLTKLRH |
EI.TGVD.CI.KFLDIARQTE.F.FLQKRLQLSVQKPEQVI....DVS.LRNE.....ALVQKHLTKLRH | |
Retrocopy | EIETGVDRCIHKFLDIARQTEYF>FLQKRLQLSVQKPEQVINGDVDVSKLRNE*HWRHALVQKHLTKLRH |
Parental | WQQVLEDI-NVQHKKPADIPQGSLAYLEQASANIPAPLKPT |
WQQVLE.I..VQ.KK.ADI.QGSL.YLEQA..NIPA.LK.T | |
Retrocopy | WQQVLEVI<HVQYKKLADIHQGSLVYLEQA-FNIPALLKCT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 16 .35 RPM |
SRP007412_cerebellum | 0 .08 RPM | 16 .47 RPM |
SRP007412_heart | 0 .03 RPM | 5 .94 RPM |
SRP007412_kidney | 0 .00 RPM | 10 .59 RPM |
SRP007412_liver | 0 .00 RPM | 8 .20 RPM |
SRP007412_testis | 0 .00 RPM | 23 .10 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_589 |
Pan troglodytes | retro_ptro_431 |
Pongo abelii | retro_pabe_601 |