RetrogeneDB ID: | retro_cfam_1025 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 21:46826645..46827282(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000014648 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.22 % |
Parental protein coverage: | 87.3 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | MFRRKLTALD-YHNPAGFNCKDETEFRNFIVWLEDQKIRHYKIEDRGNLRNIHSSDWPKFFEKYLRDVNC |
MF...L.AL...H.P.GFNCKDETE.RN..V.LED.KI..Y..EDR..LRNIHS.DWPKF...YLRDVN. | |
Retrocopy | MF*HRLVALN>NHKPNGFNCKDETECRNLNVRLED*KITYYETEDRSDLRNIHSTDWPKFLKSYLRDVNS |
Parental | PFKIQDR-QEAIDWLLGLAVRLEYGDNAEKYKDLVPDNTKNAD-NAAKNAEPLINLDVNNPDFKAGVMAL |
..KIQD..QEA.DWL.GL.VRLEY.DNA..YK.LV.DNTK.A..NAAKNAEPLINLDVNN.DFKAGVMAL | |
Retrocopy | LSKIQDL>QEANDWLFGLDVRLEYADNAVEYKELVSDNTKDAE<NAAKNAEPLINLDVNNLDFKAGVMAL |
Parental | ANLLQIQRHDDYLVMLKAIRILVQERLTQDAVAKANQTKEGLPVALDKHILGFDTGDAVLNEAAQILRLL |
.NLLQIQ.HD.Y.V.LKAIRILV...LT..AVAKANQ.KEGLPV..DKH..GFD.GDAVL.EAAQIL.LL | |
Retrocopy | SNLLQIQHHD-YPVTLKAIRILVRMLLTKEAVAKANQIKEGLPVV*DKHFPGFDRGDAVLKEAAQILWLL |
Parental | HIEELR |
H.EELR | |
Retrocopy | HMEELR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 44 .98 RPM |
SRP017611_brain | 0 .00 RPM | 23 .98 RPM |
SRP017611_kidney | 0 .00 RPM | 109 .49 RPM |
SRP017611_liver | 0 .00 RPM | 31 .33 RPM |