RetrogeneDB ID: | retro_ocun_221 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 12:100824010..100824745(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000022721 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000014681 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 98.78 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MFRRKLTALDYHNPSGFNCKDETEFRNFIVWLEDQKIRHYKIEDRGNLRNIHSSDWPKFFEKYLRDVNCP |
MFRRKLTALDYHNPSGFNCKDETEFRNFIVWLEDQKIRHYKIEDRGNLRNIHSSDWPKFFEKYLRDVNCP | |
Retrocopy | MFRRKLTALDYHNPSGFNCKDETEFRNFIVWLEDQKIRHYKIEDRGNLRNIHSSDWPKFFEKYLRDVNCP |
Parental | FKIQDRQEAIDWLLGLAVRLEYGDNAEKYKDLVPDNTKNADNATKNAEPLINLDVNNPDFKAGVMALANL |
FKIQDRQEAIDWLLGLAVRLEYGDNAEKYKDLVPDNTKNADNATKNAEPLINLDVNN.DFKAGVMALANL | |
Retrocopy | FKIQDRQEAIDWLLGLAVRLEYGDNAEKYKDLVPDNTKNADNATKNAEPLINLDVNNADFKAGVMALANL |
Parental | LQIQRHDDYLVMLKAIRILVQERLTQDAVAKANQTKEGLPVALDKHILGFDTGETDAVLNEAAQILRLLH |
LQIQRHDDYLVMLKAIRILVQERLTQDAVAKANQTKEGLPVALDKHILGFDTG..DAVLNEAAQILRLLH | |
Retrocopy | LQIQRHDDYLVMLKAIRILVQERLTQDAVAKANQTKEGLPVALDKHILGFDTG--DAVLNEAAQILRLLH |
Parental | IEELRELQTKINEAIVAVQAIIADPKTDHRLGKVGR |
IEELRELQTKINEAIVAVQAIIADPKTDHRLGKVGR | |
Retrocopy | IEELRELQTKINEAIVAVQAIIADPKTDHRLGKVGR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 6 .57 RPM | 26 .77 RPM |
SRP017611_kidney | 9 .43 RPM | 38 .72 RPM |
SRP017611_liver | 2 .70 RPM | 15 .34 RPM |