RetrogeneDB ID: | retro_fcat_1415 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D1:82783324..82783867(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C14orf166 | ||
Ensembl ID: | ENSFCAG00000002663 | ||
Aliases: | None | ||
Description: | chromosome 14 open reading frame 166 [Source:HGNC Symbol;Acc:23169] |
Percent Identity: | 78.8 % |
Parental protein coverage: | 74.59 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | YLRDVNCPFKIQDRQEAIDWLLGLAVRLEYGDNAE-KYKDVVPDNTKNADNAAKNAEPLINLDVNNPDFK |
Y.RDVNC.FKIQD.QEA.DW.LGLAVRLE..DNAE.KYKD..PDNTK.ADNAAKNAEPLI.LDVN.P.FK | |
Retrocopy | YYRDVNCLFKIQDQQEATDWFLGLAVRLEH*DNAE<KYKDLLPDNTKHADNAAKNAEPLIGLDVNIPNFK |
Parental | AGVMALANLLQIQRHDDYLVMLKAIRILVQERLTQDAVAKANQTREGLPVALDKHILGFDTGDAVLNEAA |
AGVMALAN..QI..HDDYLVMLKAI.I.VQ..L.QDA.AK.N.T.E.LPVAL.KHILGFD.G.AVLNEAA | |
Retrocopy | AGVMALANH-QIHCHDDYLVMLKAIHIVVQQYLRQDAAAKTNETKEDLPVALHKHILGFDRGNAVLNEAA |
Parental | Q-ILRLLHIEELRELQTKINEAIVAVQAIIADPKTDHRLGKVGR |
Q..L.L.H..E.RELQTKINEAIVAVQAIIADPKT.HRLGKVGR | |
Retrocopy | Q>NLGLFHMGEIRELQTKINEAIVAVQAIIADPKTEHRLGKVGR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 33 .17 RPM |
SRP017611_kidney | 0 .00 RPM | 110 .37 RPM |
SRP017611_liver | 0 .00 RPM | 52 .67 RPM |