RetrogeneDB ID: | retro_cpor_517 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_18:6741006..6741434(+) | ||
Located in intron of: | ENSCPOG00000001117 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C14ORF166 | ||
Ensembl ID: | ENSCPOG00000001317 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.47 % |
Parental protein coverage: | 58.61 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | LTALDYHNPAGFNCKDETEFRNFIVWL-EDQKIRHYKIEDRGNLRNIPSSDWPKFFEKYLRDVDCPFKIQ |
L.ALDYHN.AGFNCKDE.EFR.FIVWL.EDQKIRH.K.EDRGNL.NI.SSDW.KFF.K.LR.V.CPFKIQ | |
Retrocopy | LMALDYHNLAGFNCKDEAEFRGFIVWL<EDQKIRH*KTEDRGNLKNISSSDWLKFF*KCLRNVGCPFKIQ |
Parental | DRQEAIDWLLGLAVRLEYGDNAEKYKDLTPDNAKNIDNATKNAEPLINLDVNNPDFKAGVMALANLLQIQ |
D..EAIDW.LGLAVRLEYGDNA.KYKDLTPDNAKN.DNAT.N..PLI.LDVNNP.FK.GVMALANL.... | |
Retrocopy | DLHEAIDWFLGLAVRLEYGDNAKKYKDLTPDNAKNTDNATENVDPLISLDVNNPSFKTGVMALANLPRVK |
Parental | RHDD |
.HD. | |
Retrocopy | HHDN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 39 .40 RPM |
SRP017611_kidney | 0 .10 RPM | 97 .57 RPM |
SRP017611_liver | 0 .00 RPM | 84 .09 RPM |
SRP040447_lung | 0 .00 RPM | 61 .31 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 104 .77 RPM |