RetrogeneDB ID: | retro_mmul_2025 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 6:91664308..91664832(+) | ||
Located in intron of: | ENSMMUG00000010632 | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000011600 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.9960 | ||
Ensembl ID: | ENSMMUG00000018200 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.53 % |
Parental protein coverage: | 72.13 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | CPFKIQDRQEAIDW-LLGLAVRLEYGDNAEKYKDLVPDNSKTADNATKNAEPLINLDVNNPDFKAGVMAL |
C....QD........L..LAVRLEYGDNAEKYKDL.PD..KTADNATKNAEPLINLD.NNPD.KAGV.A. | |
Retrocopy | C*LSFQDSRSTRSY*LVSLAVRLEYGDNAEKYKDLLPDYAKTADNATKNAEPLINLDINNPDVKAGVKA- |
Parental | ANLLQIQRHDDYLVMLKAIRILVQERLTQDAVAKANQTKEGLPVALDK-HILGFDTGDAVLNEAAQILRL |
.NLLQIQ.HDDYL.M..AIRIL.QE.LTQ.AVAKANQTKEGLPVALDK..I.GFD.GDAVLN.AAQIL.L | |
Retrocopy | -NLLQIQCHDDYLAMPEAIRILAQEHLTQGAVAKANQTKEGLPVALDK<NIIGFDAGDAVLNAAAQILQL |
Parental | LHIEELRELQTKINEAIVAVQAIIADPKTDHRLGKVGR |
L.IEELRELQTKINEAIVAVQ.IIADP.TDHRLG..GR | |
Retrocopy | LDIEELRELQTKINEAIVAVQTIIADPRTDHRLGDIGR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 38 .77 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 24 .83 RPM |
SRP007412_cerebellum | 0 .06 RPM | 37 .65 RPM |
SRP007412_heart | 0 .00 RPM | 62 .89 RPM |
SRP007412_kidney | 0 .00 RPM | 65 .26 RPM |
SRP007412_liver | 0 .00 RPM | 32 .22 RPM |
SRP007412_testis | 0 .04 RPM | 53 .64 RPM |
Species | RetrogeneDB ID |
---|---|
Callithrix jacchus | retro_cjac_1947 |