RetrogeneDB ID: | retro_fcat_948 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:35635100..35635797(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C14orf166 | ||
Ensembl ID: | ENSFCAG00000002663 | ||
Aliases: | None | ||
Description: | chromosome 14 open reading frame 166 [Source:HGNC Symbol;Acc:23169] |
Percent Identity: | 78.66 % |
Parental protein coverage: | 97.13 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | FRRKLTALDYHNPAGFNCKDETEFRNFIVWLEDQKIRHYKIEDRGNLRNIHSSDWPKFFEKYLRDVNCPF |
F..KL.AL.YHNPAGFN.K.ETEFRN.IV.LEDQKI.H.KIE.RG.LRNIHSSDW.K.FEKYLR.VNCPF | |
Retrocopy | FQGKLMALNYHNPAGFN*KTETEFRNLIV*LEDQKIKHHKIEGRGSLRNIHSSDWSKSFEKYLRHVNCPF |
Parental | KIQDRQEAIDWLLGLAVRLEYGDNAEKYKDVVPDNTKNADNAAKNAEPLINLDVNNPDFKAGVMALANLL |
KIQD.QE.IDWLLGLAVRLEYGDNAEKYK...PDNTKNAD......E.LINLDVNNPD.KAGVMALAN.L | |
Retrocopy | KIQDQQEVIDWLLGLAVRLEYGDNAEKYKGLLPDNTKNAD----SVEALINLDVNNPDLKAGVMALANFL |
Parental | QIQRHDDYLVMLKAIRILVQERLT-QDAVAKANQTREGLPVALDKHILGFDTGDAVLNE-AAQILRLLHI |
QIQ....YLVMLKA.RILVQE.L..QDAVA.ANQT.EGLPV.LDK.ILGFDTGDAV.NE..AQ.L.LLHI | |
Retrocopy | QIQHLNGYLVMLKATRILVQEHLS<QDAVARANQTKEGLPVTLDKYILGFDTGDAVVNE<SAQNL*LLHI |
Parental | EELRELQTKINEAIVAVQAIIADPKTDHR |
EELR.LQ.KINEAIVAVQ.I..DPKTDHR | |
Retrocopy | EELRDLQAKINEAIVAVQVITVDPKTDHR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 33 .17 RPM |
SRP017611_kidney | 0 .00 RPM | 110 .37 RPM |
SRP017611_liver | 0 .00 RPM | 52 .67 RPM |