RetrogeneDB ID: | retro_fcat_1160 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:16972045..16972429(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C14orf166 | ||
Ensembl ID: | ENSFCAG00000002663 | ||
Aliases: | None | ||
Description: | chromosome 14 open reading frame 166 [Source:HGNC Symbol;Acc:23169] |
Percent Identity: | 66.41 % |
Parental protein coverage: | 52.46 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | FNCKDETEFRNFIVWLEDQKIRHYKIEDRGNLRNIHSSDWPKFFEKYLRDVNCPFKIQDRQEAIDWLLGL |
FNCKD.T.FRNFI....DQ.IRHY.IEDR.NLR.IHS.DWP...EK..R.VNCPFKIQDRQEA.D.LLGL | |
Retrocopy | FNCKDDTRFRNFII*PKDQEIRHYRIEDRSNLRSIHSGDWPSVSEKCFRAVNCPFKIQDRQEATDCLLGL |
Parental | AVRLEYGDNAEKYKDVVPDNTKNADNAAKNAEPLINLDVNNPDFKAGVMALANLLQIQ |
AVR.E.G.NAEK.K..VPDN.K....A.KNAEP.I.LDVNN..F.AG.MA..NL.... | |
Retrocopy | AVRFERGGNAEKDKNLVPDNAKRIGGATKNAEPSISLDVNNSVFRAGAMASVNLGEVR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 33 .17 RPM |
SRP017611_kidney | 0 .00 RPM | 110 .37 RPM |
SRP017611_liver | 0 .00 RPM | 52 .67 RPM |