Parental gene:

C14ORF166, ENSCPOG00000001317

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_23:17703944..17717333(+)


>ENSCPOG00000001317
ATGTTCCGACGCAAGCTGACGGCTCTCGACTACCACAACCCTGCCGGCTTCAACTGCAAAGATGAAACAGAATTTAGAAA
CTTTATTGTTTGGCTCGAAGACCAAAAAATCAGACACTACAAGATTGAAGACAGAGGTAATTTAAGAAACATCCCCAGCA
GTGACTGGCCCAAGTTCTTTGAAAAGTATCTCAGAGATGTTGACTGTCCTTTCAAGATTCAGGATCGACAAGAGGCAATT
GACTGGCTCCTAGGCTTAGCTGTTAGACTTGAATATGGAGATAATGCTGAAAAATACAAGGACTTAACACCTGACAATGC
AAAAAATATTGACAATGCAACTAAAAATGCAGAGCCATTGATCAATTTGGATGTAAATAATCCTGACTTTAAGGCTGGCG
TGATGGCTTTGGCTAACCTCCTTCAGATTCAGCGCCATGATGATTACCTGGTAATGCTTAAGGCAATTCGCATCTTGGTT
CAAGAGCGCCTAACACAGGATGCAGTTGCTAAAGCAAATCAAACAAAAGAGGGTTTGCCTGTTGCTTTAGACAAACATAT
TCTTGGTTTTGACACGGGAGATGCAGTTCTTAATGAAGCTGCTCAAATTCTGCGATTGCTACATATAGAAGAACTCAGAG
AGCTACAGACAAAAATTAATGAAGCCATAGTAGCTGTCCAGGCAATTATTGCTGATCCAAAGACAGACCACAGACTGGGG
AAAGTTGGAAGATGA

Library Parental gene expression (RPM)
SRP017611_brain 39 .40 RPM
SRP017611_kidney 97 .57 RPM
SRP017611_liver 84 .09 RPM
SRP040447_lung 61 .31 RPM
SRP040447_skeletal_muscle 104 .77 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000002083 ortholog_one2one 2 retrogenes
retro_amel_224, retro_amel_302,
Canis familiaris ENSCAFG00000014648 ortholog_one2many 4 retrogenes
retro_cfam_1025, retro_cfam_2042, retro_cfam_237, retro_cfam_734,
Callithrix jacchus ENSCJAG00000006926 ortholog_one2one 3 retrogenes
retro_cjac_1262, retro_cjac_1947, retro_cjac_3207,
Dasypus novemcinctus ENSDNOG00000003248 ortholog_one2one 3 retrogenes
retro_dnov_458, retro_dnov_572, retro_dnov_609,
Dipodomys ordii ENSDORG00000012335 ortholog_one2one 1 retrogene
retro_dord_619,
Equus caballus ENSECAG00000012600 ortholog_one2one 1 retrogene
retro_ecab_483,
Erinaceus europaeus ENSEEUG00000015583 ortholog_one2one 1 retrogene
retro_eeur_366,
Felis catus ENSFCAG00000002663 ortholog_one2one 3 retrogenes
retro_fcat_1160, retro_fcat_1415, retro_fcat_948,
Homo sapiens ENSG00000087302 ortholog_one2one 1 retrogene
retro_hsap_2307,
Loxodonta africana ENSLAFG00000003162 ortholog_one2one 1 retrogene
retro_lafr_301,
Microcebus murinus ENSMICG00000008720 ortholog_one2one 1 retrogene
retro_mmur_857,
Myotis lucifugus ENSMLUG00000008643 ortholog_one2many 6 retrogenes
retro_mluc_1228, retro_mluc_1518, retro_mluc_1834, retro_mluc_2610, retro_mluc_456, retro_mluc_676,
Macaca mulatta ENSMMUG00000018200 ortholog_one2one 2 retrogenes
retro_mmul_1045, retro_mmul_2025,
Monodelphis domestica ENSMODG00000013211 ortholog_one2one 1 retrogene
retro_mdom_1296,
Mustela putorius furo ENSMPUG00000005253 ortholog_one2one 6 retrogenes
retro_mputfur_1333, retro_mputfur_1421, retro_mputfur_203, retro_mputfur_328, retro_mputfur_655, retro_mputfur_797,
Mus musculus ENSMUSG00000021807 possible_ortholog 2 retrogenes
retro_mmus_140, retro_mmus_3203,
Nomascus leucogenys ENSNLEG00000012406 ortholog_one2one 1 retrogene
retro_nleu_2749,
Oryctolagus cuniculus ENSOCUG00000014681 ortholog_one2many 1 retrogene
retro_ocun_221,
Otolemur garnettii ENSOGAG00000013232 ortholog_one2one 5 retrogenes
retro_ogar_1060, retro_ogar_1856, retro_ogar_2351, retro_ogar_2976, retro_ogar_3192,
Ochotona princeps ENSOPRG00000016352 ortholog_one2one 2 retrogenes
retro_opri_257, retro_opri_884,
Pongo abelii ENSPPYG00000005814 ortholog_one2many 1 retrogene
retro_pabe_1980,
Pan troglodytes ENSPTRG00000006344 ortholog_one2one 1 retrogene
retro_ptro_1631,
Pteropus vampyrus ENSPVAG00000013392 ortholog_one2one 1 retrogene
retro_pvam_1088,
Sus scrofa ENSSSCG00000005029 ortholog_one2one 1 retrogene
retro_sscr_1093,
Tupaia belangeri ENSTBEG00000013898 ortholog_one2one 5 retrogenes
retro_tbel_2579, retro_tbel_4337, retro_tbel_683, retro_tbel_880, retro_tbel_881,
Tarsius syrichta ENSTSYG00000004528 ortholog_one2one 6 retrogenes
retro_tsyr_1183, retro_tsyr_1289, retro_tsyr_1353, retro_tsyr_157, retro_tsyr_541, retro_tsyr_939,
Tursiops truncatus ENSTTRG00000005721 ortholog_one2one 1 retrogene
retro_ttru_83,
Vicugna pacos ENSVPAG00000011443 ortholog_one2one 1 retrogene
retro_vpac_142,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_517 78.47 58.61
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2. retro_cpor_541 78.91 52.05
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3. retro_cpor_1041 69.66 58.61
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4. retro_cpor_1177 76.85 81.97
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5. retro_cpor_1239 62.80 66.39
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6. retro_cpor_1247 73.39 50.82
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Download FASTA sequences of all ENSCPOG00000001317 retrocopies