RetrogeneDB ID: | retro_mmus_140 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 3:88576406..88577141(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000074479 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | 2700060E02Rik | ||
Ensembl ID: | ENSMUSG00000021807 | ||
Aliases: | None | ||
Description: | RIKEN cDNA 2700060E02 gene [Source:MGI Symbol;Acc:MGI:1915295] |
Percent Identity: | 97.95 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MFRRKLTALDYHNPSGFNCKDETEFRNFIVWLEDQKIRHYKIEDRGNLRNIHSSDWPKFFEKYLKDVNCP |
MFRRKLTALDYHNPSGF.CKDETEFRNF.VWLEDQKIRHYKIEDRGNLRNIHSSDWPKFFEKYLKDVNCP | |
Retrocopy | MFRRKLTALDYHNPSGFKCKDETEFRNFNVWLEDQKIRHYKIEDRGNLRNIHSSDWPKFFEKYLKDVNCP |
Parental | FKIQDRQEAIDWLLGLAVRLEYGDNAEKYKDLVPDNRKNTDNAAKNAEPLINLDVNNPDFKAGVMALANL |
FKIQD.QEAIDWLLGLAVRLEYGDNAEKYKDLVPDNRKNTDNAAKNAEPLINLDVNNPDFKAGVMALANL | |
Retrocopy | FKIQDQQEAIDWLLGLAVRLEYGDNAEKYKDLVPDNRKNTDNAAKNAEPLINLDVNNPDFKAGVMALANL |
Parental | LQIQRHDDYLVMLKAIRILVQERLTQDAVAKANQTKEGLPVALEKHILGFDTGDAVLNEAAQILRLLHIE |
LQIQ.HDDYLVMLKAIRILVQERLTQDAVAKANQTKEGLPVAL.KHILGFDTGDAVLNEAAQILRLLHIE | |
Retrocopy | LQIQHHDDYLVMLKAIRILVQERLTQDAVAKANQTKEGLPVALGKHILGFDTGDAVLNEAAQILRLLHIE |
Parental | ELRELQTKINEAIVAVQAIIADPKTDHRLGKVGR |
ELRELQTKINEAIVAVQAIIADPKTDHRLGKVGR | |
Retrocopy | ELRELQTKINEAIVAVQAIIADPKTDHRLGKVGR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .82 RPM | 32 .64 RPM |
SRP007412_cerebellum | 1 .69 RPM | 21 .80 RPM |
SRP007412_heart | 0 .12 RPM | 34 .21 RPM |
SRP007412_kidney | 2 .43 RPM | 30 .43 RPM |
SRP007412_liver | 2 .18 RPM | 27 .28 RPM |
SRP007412_testis | 4 .21 RPM | 40 .89 RPM |