RetrogeneDB ID: | retro_cfam_1445 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 31:14820086..14820814(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000008364 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSCAFG00000008021 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris ribosomal protein L7 (RPL7), mRNA. [Source:RefSeq mRNA;Acc:NM_001252227] |
Percent Identity: | 84. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MEGAEEKKKKVPAVPETLKKKRRNFAELKIKRLRKK-FAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEI |
MEGAEEKK..V.AVPETLKKK.R.F.E.KIKRLRKK.FAQKMLRKARRKLIYEKAKH....Y...YR... | |
Retrocopy | MEGAEEKK--VLAVPETLKKKQRYFTEWKIKRLRKK>FAQKMLRKARRKLIYEKAKH----YHKEYRQM* |
Parental | R-MARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASVNMLRIVEP |
R...RMARKAGNFY.PAEPKLA.VIRIRGIN.VSPKVRKVLQ.LRL.QIF.GTFVKLNKASVN.LRIVEP | |
Retrocopy | R>LTRMARKAGNFYMPAEPKLAYVIRIRGINDVSPKVRKVLQFLRLHQIFKGTFVKLNKASVNILRIVEP |
Parental | YIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNTLIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFL |
.IAWGYPNLKS.NELIYKRGY.KINKKRIALTDNTLIA.SLGKYGIICME.LIHE.Y..GK.FKE.NNFL | |
Retrocopy | HIAWGYPNLKSMNELIYKRGYVKINKKRIALTDNTLIAQSLGKYGIICMENLIHEVYIIGKHFKEVNNFL |
Parental | WPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN |
WPFKLSSP..GMKKKTTHFVEGGDAGNREDQINRLIRRMN | |
Retrocopy | WPFKLSSPCSGMKKKTTHFVEGGDAGNREDQINRLIRRMN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .04 RPM | 454 .47 RPM |
SRP017611_brain | 0 .00 RPM | 183 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 893 .22 RPM |
SRP017611_liver | 0 .00 RPM | 289 .69 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001821 | 5 retrocopies | |
Canis familiaris | ENSCAFG00000001728 | 4 retrocopies | |
Canis familiaris | ENSCAFG00000008021 | 28 retrocopies |
retro_cfam_1039, retro_cfam_1075, retro_cfam_1079, retro_cfam_1167, retro_cfam_1209, retro_cfam_1236, retro_cfam_1270, retro_cfam_1308, retro_cfam_1390, retro_cfam_1436, retro_cfam_1445 , retro_cfam_1453, retro_cfam_1524, retro_cfam_1541, retro_cfam_1699, retro_cfam_1755, retro_cfam_1855, retro_cfam_1856, retro_cfam_2051, retro_cfam_2192, retro_cfam_338, retro_cfam_403, retro_cfam_563, retro_cfam_609, retro_cfam_737, retro_cfam_74, retro_cfam_922, retro_cfam_998,
|
Dasypus novemcinctus | ENSDNOG00000017654 | 15 retrocopies | |
Felis catus | ENSFCAG00000028446 | 6 retrocopies | |
Latimeria chalumnae | ENSLACG00000003571 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016319 | 9 retrocopies | |
Monodelphis domestica | ENSMODG00000007136 | 4 retrocopies | |
Sus scrofa | ENSSSCG00000006182 | 3 retrocopies |