RetrogeneDB ID: | retro_cfam_1464 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 32:11093518..11093934(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000001728 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.05 % |
Parental protein coverage: | 56.68 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | EVKPHGLEVPDKHSLAFIVRIQRINGVSSLVQRTIARLRLKKIFSGVFFRVTPQTMKTLRIVEPYVTWGF |
EVKPHG.EVPDKH.L.F.V..Q.ING.S.LVQRT.ARL.....FSGVF..VT.QT.K.L.I.EPY...GF | |
Retrocopy | EVKPHG*EVPDKHFLVFTVYTQSINGMSLLVQRTTARLA*R-FFSGVFVKVTLQTIKILCILEPYII*GF |
Parental | PNLKSVRELILKRGQAKVKNKTIPLTDNTVIEEHLGKYGVIC-LEDLIHEIAFPGKNFQAISAFLRPFHL |
PNLKSV.ELILK.GQ.K.KNK.I.LTDNTVIE.HL.KYGV.C.LEDLIHEIAF.GKNFQAIS.FL.PFHL | |
Retrocopy | PNLKSVWELILKHGQGKIKNKIILLTDNTVIEKHLEKYGVMC<LEDLIHEIAFLGKNFQAISEFLMPFHL |
Parental | S |
S | |
Retrocopy | S |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 11 .68 RPM |
SRP017611_brain | 0 .00 RPM | 13 .89 RPM |
SRP017611_kidney | 0 .00 RPM | 19 .94 RPM |
SRP017611_liver | 0 .00 RPM | 10 .44 RPM |