Parental gene:

RPL7, ENSCAFG00000008021

Aliases:None
Description:Canis lupus familiaris ribosomal protein L7 (RPL7), mRNA. [Source:RefSeq mRNA;Acc:NM_001252227]
Organism:Dog (Canis familiaris)
Coordinates:29:21881047..21884401(-)


>ENSCAFG00000008021
ATGGAGGGTGCAGAAGAGAAGAAGAAGAAGGTTCCTGCTGTGCCGGAAACCCTTAAGAAAAAGCGAAGGAACTTCGCGGA
GTTGAAGATCAAGCGTCTGAGAAAAAAGTTTGCCCAAAAGATGCTTCGAAAGGCAAGGAGGAAGCTTATCTATGAAAAGG
CTAAGCATTACCACAAGGAATACAGGCAGATGTACAGAACTGAGATTCGCATGGCGAGGATGGCGAGAAAAGCCGGCAAC
TTCTACGTGCCTGCAGAACCCAAGTTGGCATTTGTCATCAGGATCAGAGGTATCAATGGTGTGAGCCCAAAGGTTCGAAA
GGTGTTGCAGCTTCTTCGCCTTCGCCAGATCTTCAATGGCACCTTTGTTAAGCTCAACAAGGCTTCAGTTAACATGCTAA
GGATTGTGGAACCGTATATAGCATGGGGGTACCCAAACCTGAAGTCAGTGAATGAATTGATCTACAAGCGTGGTTATGGC
AAGATCAACAAGAAGCGAATTGCCCTGACAGATAACACATTGATTGCTCGGTCTCTTGGTAAATATGGCATCATCTGCAT
GGAGGATCTGATTCACGAGATCTATACCGTTGGAAAACGTTTCAAAGAAGCCAACAACTTTTTATGGCCCTTCAAATTAT
CTTCTCCACGTGGCGGAATGAAGAAAAAGACCACCCATTTTGTAGAAGGTGGAGATGCTGGCAACAGGGAAGACCAGATC
AATAGGCTTATTAGAAGGATGAACTAA

Library Parental gene expression (RPM)
SRP012049_cerebellum 454 .47 RPM
SRP017611_brain 183 .00 RPM
SRP017611_kidney 893 .22 RPM
SRP017611_liver 289 .69 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000001821 ortholog_one2many 5 retrogenes
retro_amel_1230, retro_amel_1632, retro_amel_760, retro_amel_933, retro_amel_937,
Canis familiaris ENSCAFG00000001728 within_species_paralog 4 retrogenes
retro_cfam_1180, retro_cfam_1464, retro_cfam_1638, retro_cfam_330,
Dasypus novemcinctus ENSDNOG00000017654 possible_ortholog 15 retrogenes
retro_dnov_1561, retro_dnov_1692, retro_dnov_182, retro_dnov_1893, retro_dnov_209, retro_dnov_2158, retro_dnov_2568, retro_dnov_264, retro_dnov_2657, retro_dnov_279, retro_dnov_287, retro_dnov_365, retro_dnov_655, retro_dnov_77, retro_dnov_971,
Felis catus ENSFCAG00000028446 ortholog_one2many 6 retrogenes
retro_fcat_1643, retro_fcat_230, retro_fcat_255, retro_fcat_338, retro_fcat_342, retro_fcat_945,
Latimeria chalumnae ENSLACG00000003571 ortholog_one2many 1 retrogene
retro_lcha_63,
Macropus eugenii ENSMEUG00000016319 ortholog_many2many 9 retrogenes
retro_meug_1002, retro_meug_1449, retro_meug_1942, retro_meug_1947, retro_meug_60, retro_meug_760, retro_meug_84, retro_meug_968, retro_meug_99,
Monodelphis domestica ENSMODG00000007136 ortholog_many2many 4 retrogenes
retro_mdom_1341, retro_mdom_1998, retro_mdom_371, retro_mdom_66,
Sus scrofa ENSSSCG00000006182 possible_ortholog 3 retrogenes
retro_sscr_1138, retro_sscr_209, retro_sscr_796,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_74 95.97 100.00
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2. retro_cfam_338 85.71 92.74
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3. retro_cfam_403 83.70 54.44
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4. retro_cfam_563 92.00 90.73
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5. retro_cfam_609 91.39 97.98
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6. retro_cfam_737 84.72 57.66
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7. retro_cfam_922 76.62 60.89
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8. retro_cfam_998 90.73 100.00
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9. retro_cfam_1039 65.07 58.06
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10. retro_cfam_1075 68.37 78.23
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11. retro_cfam_1079 85.99 62.90
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12. retro_cfam_1167 85.38 100.00
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13. retro_cfam_1209 81.56 56.05
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14. retro_cfam_1236 73.55 61.69
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15. retro_cfam_1270 84.38 51.21
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16. retro_cfam_1308 79.79 74.60
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17. retro_cfam_1390 76.92 56.45
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18. retro_cfam_1436 75.16 60.89
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19. retro_cfam_1445 84.00 100.00
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20. retro_cfam_1453 87.90 99.60
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21. retro_cfam_1524 77.14 55.24
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22. retro_cfam_1541 74.17 60.89
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23. retro_cfam_1699 88.71 100.00
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24. retro_cfam_1755 88.35 100.00
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25. retro_cfam_1855 76.92 61.29
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26. retro_cfam_1856 66.13 99.19
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27. retro_cfam_2051 84.02 67.74
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28. retro_cfam_2192 93.95 100.00
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Download FASTA sequences of all ENSCAFG00000008021 retrocopies