RetrogeneDB ID: | retro_amel_760 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192612.1:1045882..1046345(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSAMEG00000001821 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.35 % |
Parental protein coverage: | 60.47 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | TEIRMARMARKAGNFDVPAEPKLAFVIRIRGINGVSPKVRKVL-QLLRLRQIFNGTFVKLNKASVNMLRI |
TE.R....AR.AGNF..P.EP..A.VIR.RGINGVSP..R.VL..LLRL..IFNGTFV.L..AS.NMLRI | |
Retrocopy | TELRFEWLARGAGNFSIPVEPTSAVVIRTRGINGVSPRARQVL<ELLRLC*IFNGTFVTLSMASGNMLRI |
Parental | VEPYIAWGYPN-LKSVNELIYKRGYGKINKKRIALTDNTLIARSLGKYGIICMEDLIHEIYTVGKRFKEA |
.EPYIA...P..LKSVNELIYK..YGKINKK.IALTDNTL.ARSL.K.GIICME.LIHEIYTVGK.FKEA | |
Retrocopy | AEPYIARWDPT<LKSVNELIYKHSYGKINKKQIALTDNTLSARSLSK*GIICMEVLIHEIYTVGKHFKEA |
Parental | NNFLWPFKLSSPRGGMKK |
..F..P....S.RG...K | |
Retrocopy | -IFYGPSIIFSARGNEVK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001821 | 5 retrocopies | |
Ailuropoda melanoleuca | ENSAMEG00000012791 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000008021 | 28 retrocopies |
retro_cfam_1039, retro_cfam_1075, retro_cfam_1079, retro_cfam_1167, retro_cfam_1209, retro_cfam_1236, retro_cfam_1270, retro_cfam_1308, retro_cfam_1390, retro_cfam_1436, retro_cfam_1445, retro_cfam_1453, retro_cfam_1524, retro_cfam_1541, retro_cfam_1699, retro_cfam_1755, retro_cfam_1855, retro_cfam_1856, retro_cfam_2051, retro_cfam_2192, retro_cfam_338, retro_cfam_403, retro_cfam_563, retro_cfam_609, retro_cfam_737, retro_cfam_74, retro_cfam_922, retro_cfam_998,
|
Dasypus novemcinctus | ENSDNOG00000017654 | 15 retrocopies | |
Felis catus | ENSFCAG00000028446 | 6 retrocopies | |
Latimeria chalumnae | ENSLACG00000003571 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016319 | 9 retrocopies | |
Monodelphis domestica | ENSMODG00000007136 | 4 retrocopies | |
Sus scrofa | ENSSSCG00000006182 | 3 retrocopies |