RetrogeneDB ID: | retro_cfam_1659 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 4:49179238..49179474(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PDCD5 | ||
Ensembl ID: | ENSCAFG00000007555 | ||
Aliases: | None | ||
Description: | programmed cell death 5 [Source:HGNC Symbol;Acc:8764] |
Percent Identity: | 85. % |
Parental protein coverage: | 70.27 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | LDQSARARLSNLALVKPEK-TKAVENYLIQMARYGQLSGKVSEQGLIEILEK-VSQQTEKKTTVKFNRRK |
LDQS..A.L..LAL.KPEK.TKAVEN.LIQMARY.QL.GKVSEQGLIEILEK.VSQQTEKKTTVKFNRRK | |
Retrocopy | LDQSFWALLNDLALEKPEK>TKAVENHLIQMARY*QLNGKVSEQGLIEILEK>VSQQTEKKTTVKFNRRK |
Parental | VMDSDEEDDY |
VMDS.EEDDY | |
Retrocopy | VMDSEEEDDY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 41 .37 RPM |
SRP017611_brain | 0 .00 RPM | 24 .85 RPM |
SRP017611_kidney | 0 .07 RPM | 24 .43 RPM |
SRP017611_liver | 0 .00 RPM | 9 .72 RPM |