Parental gene:

PDCD5, ENSCJAG00000018410

Aliases:None
Description:programmed cell death 5 [Source:HGNC Symbol;Acc:8764]
Organism:Marmoset (Callithrix jacchus)
Coordinates:22:27074329..27080695(+)


>ENSCJAG00000018410
ATGGCGGAAGAGGAGCTGGAGGCGCTGAGGAGGCAGAGGCTGGCCGAGCTACAGGCCAAGCACGGGGATCCTGGCGATGC
GGCCCAGCAGGAAGCAAAGCACAGGGAAGCAGAAATGAGAAACAGTATTTTAGCCCAAGTACTGGATCAGTCAGCCCGGG
CCAGGTTAAGTAACTTGGCACTTGTAAAGCCTGAAAAAACTAAAGCAGTAGAGAATTATCTTATACAGATGGCAAGATAT
GGACAAATAAGTGAGAAGGTAAGCTTAGACTGCCTTGAGGATCTTTACTGTTACCTGCTTTATGAAAACATGGCTTCAAA
AGGTCAGCTTCACTGGATTACAGGATTCTTGCTGACTCTTACAAGAAATTGTTGCAGGGAGAAG

Library Parental gene expression (RPM)
SRP051959_colon 9 .10 RPM
SRP051959_heart 15 .91 RPM
SRP051959_kidney 12 .67 RPM
SRP051959_liver 11 .72 RPM
SRP051959_lung 12 .01 RPM
SRP051959_lymph_node 17 .85 RPM
SRP051959_skeletal_muscle 13 .95 RPM
SRP051959_spleen 15 .63 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000007555 ortholog_one2one 3 retrogenes
retro_cfam_1659, retro_cfam_535, retro_cfam_838,
Cavia porcellus ENSCPOG00000000159 ortholog_one2one 2 retrogenes
retro_cpor_1024, retro_cpor_816,
Dasypus novemcinctus ENSDNOG00000004010 ortholog_one2one 3 retrogenes
retro_dnov_283, retro_dnov_408, retro_dnov_899,
Equus caballus ENSECAG00000019406 ortholog_one2one 1 retrogene
retro_ecab_1007,
Erinaceus europaeus ENSEEUG00000001182 ortholog_one2one 1 retrogene
retro_eeur_276,
Homo sapiens ENSG00000105185 ortholog_one2one 1 retrogene
retro_hsap_3194,
Gorilla gorilla ENSGGOG00000006169 ortholog_one2one 1 retrogene
retro_ggor_1334,
Macropus eugenii ENSMEUG00000007777 ortholog_one2one 1 retrogene
retro_meug_1855,
Myotis lucifugus ENSMLUG00000007141 ortholog_one2one 1 retrogene
retro_mluc_1497,
Macaca mulatta ENSMMUG00000015395 ortholog_one2one 1 retrogene
retro_mmul_2015,
Monodelphis domestica ENSMODG00000012326 ortholog_one2one 4 retrogenes
retro_mdom_1012, retro_mdom_1693, retro_mdom_411, retro_mdom_893,
Mus musculus ENSMUSG00000030417 ortholog_one2one 1 retrogene
retro_mmus_519,
Oryctolagus cuniculus ENSOCUG00000013220 ortholog_one2one 1 retrogene
retro_ocun_828,
Otolemur garnettii ENSOGAG00000025274 ortholog_one2one 3 retrogenes
retro_ogar_3143, retro_ogar_479, retro_ogar_592,
Ochotona princeps ENSOPRG00000016642 ortholog_one2one 1 retrogene
retro_opri_604,
Pongo abelii ENSPPYG00000009817 ortholog_one2one 1 retrogene
retro_pabe_2650,
Pan troglodytes ENSPTRG00000010791 ortholog_one2one 1 retrogene
retro_ptro_2250,
Rattus norvegicus ENSRNOG00000013250 ortholog_one2many 1 retrogene
retro_rnor_167,
Rattus norvegicus ENSRNOG00000050827 ortholog_one2many 1 retrogene
retro_rnor_1116,
Sarcophilus harrisii ENSSHAG00000006705 ortholog_one2one 1 retrogene
retro_shar_354,
Sus scrofa ENSSSCG00000002860 ortholog_one2one 2 retrogenes
retro_sscr_1098, retro_sscr_278,
Ictidomys tridecemlineatus ENSSTOG00000025794 ortholog_one2one 3 retrogenes
retro_itri_1151, retro_itri_1645, retro_itri_563,
Tursiops truncatus ENSTTRG00000003999 ortholog_one2one 2 retrogenes
retro_ttru_1291, retro_ttru_1472,
Vicugna pacos ENSVPAG00000012046 ortholog_one2one 1 retrogene
retro_vpac_383,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1020 92.80 100.00
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2. retro_cjac_1959 78.10 83.20
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3. retro_cjac_2855 98.48 52.80
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4. retro_cjac_2937 89.71 53.60
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5. retro_cjac_3841 98.39 99.20
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6. retro_cjac_3942 93.60 100.00
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Download FASTA sequences of all ENSCJAG00000018410 retrocopies