RetrogeneDB ID: | retro_cpor_816 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_29:24837927..24838300(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PDCD5 | ||
Ensembl ID: | ENSCPOG00000000159 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 65.89 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MADEELEALRKQRLAELQAKHGFQDPNDAAQQEAKHREAEMRNSILAQVLDQSARARLSNLALVKPEKTK |
MAD.EL.ALR.Q.L.ELQ.KH...DP....QQ.AKH.EAEM.N..LAQ.L.Q.ARARLS.LAL.K.EKTK | |
Retrocopy | MADVEL*ALRQQSLVELQTKHS--DPKNVPQQ*AKHNEAEMGNNVLAQILNQLARARLSHLALMKSEKTK |
Parental | AVENYLIQMARYGQLSG-KVSEQGLIEILEKVSQQTE-KKTTVKFNRRKVMDSDEDDDY |
.V.NYLI..ARY.QL.G..VS.QGLIEIL.KVS.QTE.K..T.K.NR.KVMDSD..D.Y | |
Retrocopy | EVDNYLIHLARYKQLTG<NVSVQGLIEILGKVS*QTE<KQKTAKLNRTKVMDSDKGDGY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 15 .82 RPM |
SRP017611_kidney | 0 .00 RPM | 21 .67 RPM |
SRP017611_liver | 0 .04 RPM | 18 .80 RPM |
SRP040447_lung | 0 .00 RPM | 14 .12 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 27 .07 RPM |