RetrogeneDB ID: | retro_mdom_1012 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 3:210016512..210016879(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PDCD5 | ||
Ensembl ID: | ENSMODG00000012326 | ||
Aliases: | None | ||
Description: | programmed cell death 5 [Source:HGNC Symbol;Acc:8764] |
Percent Identity: | 59.06 % |
Parental protein coverage: | 97.6 % |
Number of stop codons detected: | 7 |
Number of frameshifts detected | 1 |
Parental | DEDLEALR--KQRLAELQAKHGDSSGDPAQQEAKHREAEMRNNILAQVLDQSARARLSNLALVKPEKAKA |
D.DLEA....K.RLA..Q.K.G...G.PAQ...K..EA.M..NILAQ.L.QS...RLSN.AL.K..KAK. | |
Retrocopy | DKDLEAATG*KKRLAKFQVKCG--LGVPAQ--TKCSEAHMSDNILAQLLNQS*QIRLSNTALIKSKKAKT |
Parental | VENYLIQ-MARYGQLSGKVTEQGLIEI-LEK-VSQQTEKKITVKFNRRKVMDSDEDD |
VENYLI....RYG.L..K..EQ.L.EI.L.K.VS....KKIT.KFNRRKVMDSDED. | |
Retrocopy | VENYLI**LTRYG*LNSKALEQELMEI>LKK*VSK*AKKKITRKFNRRKVMDSDEDN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 89 .52 RPM |
SRP007412_cerebellum | 0 .00 RPM | 74 .11 RPM |
SRP007412_heart | 0 .00 RPM | 133 .77 RPM |
SRP007412_kidney | 0 .00 RPM | 46 .09 RPM |
SRP007412_liver | 0 .00 RPM | 74 .01 RPM |
SRP007412_testis | 0 .00 RPM | 132 .20 RPM |